1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtaaccaagacaccaaatgtttagcaaaatgcatattcctttgtatttgaatgctattttttatgtttcgttcttctggtaatacatttaatctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG
species | Zea mays |
transcript | GRMZM2G028004_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAG GAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACTEST: gi|74239471|gb|DT647385.1|DT647385
genomic: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAGgtttgtctct ... atctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACT
EST: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAG GAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACTEST: gi|211001688|gb|FL223536.1|FL223536
genomic: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAGgtttgtctct ... atctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACT
EST: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAG GAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACT
genomic: TCAGCTGGACGCCAAGGATAATTGTTTTCCATAATTTTCTTAGTTCAGAGgtttgtctct ... atctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACT
tttgaatgctattttttatgtttcgttcttctggtaatacatttaatctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG
atttaat putative branch site (score: 4)
tctttac CT-rich tract
taatacatttaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccaagacaccaaatgtttagcaaaatgcatattcctttgtatttgaatgctattttttatgtttcgttcttctggtaatacatttaatctttacagGAGTGTGATTACCTAATGGCAATTGCTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA