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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttcttaactccagctagcatttacaaaattgtgtacattttacataatttactaattttattttagttgcattttgcttccttttccctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG

Basic information

species Zea mays
transcript GRMZM2G028004_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31364418|gb|CD448773.1|CD448773
EST:     GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG                         GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
EST: gi|74239471|gb|DT647385.1|DT647385
EST:     GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG                         GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
EST: gi|211001688|gb|FL223536.1|FL223536
EST:     GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG                         GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatttactaattttattttagttgcattttgcttccttttccctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
       tactaat  putative branch site (score: 1)
                        ttgcattttgcttcct  putative PPT
     tttactaattttattt  TA-rich tract