1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACTTCAAGAAGGATTTAGAGGAGTGCCAGCGGTTGGAGCCCACAGATAACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcgggtaccatcaactaccatcacttaaatgaccagctctccatttctccacgtactttctaaacataacctctgtttgcag
species | Zea mays |
transcript | GRMZM2G027309_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATT GAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGACEST: gi|33466933|gb|CF243982.1|CF243982
genomic: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcg ... ctgtttgcagGAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGAC
EST: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATT GAATTTTCCCAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTATTGACEST: gi|76018320|gb|DT945490.1|DT945490
genomic: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcg ... ctgtttgcagGAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGAC
EST: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATT GAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGACEST: gi|89760414|gb|DY688833.1|DY688833
genomic: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcg ... ctgtttgcagGAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGAC
EST: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATT GAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGAC
genomic: ACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcg ... ctgtttgcagGAATTTTCACAGGATAGCTTTATGACATGGGCAGCTGAAAAGATTACTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTCAAGAAGGATTTAGAGGAGTGCCAGCGGTTGGAGCCCACAGATAACACAAACCTTGAGCTTGACAACACTGATGAGTTTCGACTCAGCCAAATTgtatggttcgggtaccatcaactaccatcacttaaatgaccagctctccatttctccacgtactttctaaacataacctctgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT