1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gccttctttgaaacagacatttcacattctggttggaacactcttgctttgatactccacttgtttttcaacactcaggagtcttctctgtccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGCTTACAACACTGGGACTAGGAAGCGTCGAAGGATAAACACTGACGATGC
species | Zea mays |
transcript | GRMZM2G027309_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGEST: gi|33466934|gb|CF243983.1|CF243983
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGEST: gi|91055141|gb|EB165559.1|EB165559
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGEST: gi|94475100|gb|EB704058.1|EB704058
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGEST: gi|30160507|gb|CB924236.1|CB924236
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGEST: gi|89760415|gb|DY688834.1|DY688834
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
EST: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAG GTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
genomic: AGTTGAGGAAGATGAAGGCATCTGTTACACTCATCCACAGAAACTTCCAGgtataatctt ... tccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGG
gctttgatactccacttgtttttcaacactcaggagtcttctctgtccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGCTTACAACACTGGGACTAGGAAGCGTCGAAGGATAAACACTGACGATGC
ctttgat putative branch site (score: 10)
tcttctctgtccattt putative PPT
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttctttgaaacagacatttcacattctggttggaacactcttgctttgatactccacttgtttttcaacactcaggagtcttctctgtccatttcagGTGTTAAACAAAATGGAAGTGTATCACATTTCTTCCACAGAACATTTAAGGCTTACAACACTGGGACTAGGAAGCGTCGAAGGATAAACACTGACGATGC
- - - - - aaacaga
- - - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - - - - - - - - tgctttg