1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTGAATCAAATCTCCCAGATTTTACTACATTGCCCACTGACAAACATGTTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAGgtaactgaatattctcttgtgttcattatctatattttctatgtggcccacatttgtaggtgataggtaagttgaaccagaaaatagaacatatactgctaacttattttttgataattgaaaatagaatttagaaatacatttgtttttcctaatgtgcag
species | Zea mays |
transcript | GRMZM2G027309_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAG CTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCCEST: gi|211418567|gb|FL176083.1|FL176083
genomic: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAGgtaactgaat ... taatgtgcagCTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCC
EST: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAG CTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCCEST: gi|78179158|gb|DV549531.1|DV549531
genomic: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAGgtaactgaat ... taatgtgcagCTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCC
EST: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAG CTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCC
genomic: TTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAGgtaactgaat ... taatgtgcagCTTAATAGAAACTGTGAAATAAACATTGAAGAGACTGTTGTCCTCCCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAATCAAATCTCCCAGATTTTACTACATTGCCCACTGACAAACATGTTGGTACAGTCCAAGAAGTTGTTCATAATCCTGAGCATAATCTTTACCAGgtaactgaatattctcttgtgttcattatctatattttctatgtggcccacatttgtaggtgataggtaagttgaaccagaaaatagaacatatactgctaacttattttttgataattgaaaatagaatttagaaatacatttgtttttcctaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT