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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtgtagcaaactaggctttccccgtgcgtctgtactgtacttcttcgcgcttgtccttttgtgccgcccaccacatgtgcatgcgtgcgtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGGCTCGAACCCGAACTACTTCGCGGTGCTCATCGAGTACGAGTCCGGGGAC

Basic information

species Zea mays
transcript GRMZM2G026956_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026956_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g44106.1 (Oryza sativa), 3'ss of exon 3
ctgtgtagcaaactaggctttccccgtgcgtctgtactgtacttcttcgcgcttgtccttttgtgccgcccaccac--atgtgcatgcgtgc----gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGGCTCGAACCCGAACTACTTCGCGGTGCTCATCGAGTACGAGTCCGGGGAC
    || |||  |  |||   |  ||||   | ||     |  | |  |  ||  |||| | |   || ||   |   || | ||||| |||    ||| |||||||||||||||||| ||||  ||| ||||||||||||||  ||||||||||||||| |||| | ||||| |||| |||||  ||||| |||||  ||| |||
----gt-gcatgcatggcagccgtcgtgaaccggtcgaccaactgtgtgatctcttcctctcg-atcgtccgtgatcgatctacatgcatgctaccgtgtgtgcagGGTGCCGTGCAAATGGCAGGGGGTGGACATCGCGTTCCGGGTGGACGCCGGCTCCAACCAGTACTACCTCGCCGTGCTGGTCGAGGACGAGGACGGCGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50327792|gb|CO522918.1|CO522918
EST:     CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCG                         GGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
genomic: CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCGgtaagctagc ... gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
EST: gi|71768749|gb|DR966686.1|DR966686
EST:     CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCG                         GGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
genomic: CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCGgtaagctagc ... gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
EST: gi|74242240|gb|DT650154.1|DT650154
EST:     CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCG                         GGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
genomic: CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCGgtaagctagc ... gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
EST: gi|4885999|gb|AI677119.1|AI677119
EST:     CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCG                         GGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
genomic: CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCGgtaagctagc ... gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
EST: gi|50334672|gb|CO529798.1|CO529798
EST:     CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCG                         GGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG
genomic: CAGGCGGACCAGCTCCGCGGCGCCGGACACCTCAAGATCCAGTACACTCGgtaagctagc ... gtgcgtgcagGGTGCCGTGCAACTGGCGAGGGCTGGACATCGCGTTCAAGGTGGACGCCGG