1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCCCTGGCGCGCCCGTCGAGCTCCACCGCAAGCTCTCCGGGTGGTCCGACGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcagatgcacggccgccggacgacgcgcgtgaattttccatgaaccatgcattttcccttacacctgcacacaaaacaaaaataaaaaataaaataaatgaataaagaatctgtaacaaatgccttccggggaccgggtatacgtgtgtacgtcggtttttccgtgcag
species | Zea mays |
transcript | GRMZM2G026956_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|37421351|gb|CF648374.1|CF648374
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|101395276|gb|EB819568.1|EB819568
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCCAGAACGCCCGTCGACCAGCCGCCGTTCTCGTCEST: gi|71768749|gb|DR966686.1|DR966686
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACC-AGAACGCC-GTCGACCAGCCGCCGTTCTCGTC
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|74242240|gb|DT650154.1|DT650154
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|4885999|gb|AI677119.1|AI677119
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|78085232|gb|DV513625.1|DV513625
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|211085443|gb|FL299891.1|FL299891
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCAEST: gi|50334672|gb|CO529798.1|CO529798
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
EST: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACG GTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
genomic: CGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcaga ... ttccgtgcagGTGGTGCATGCGGGTACCAGAACGCCGTCGACCAGCCGCCGTTCTCGTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCTGGCGCGCCCGTCGAGCTCCACCGCAAGCTCTCCGGGTGGTCCGACGACGCGGGCGCGACGTGGTACGGCGCAGCCACCGGCGCTGGGAGCGACGgtgagtcagatgcacggccgccggacgacgcgcgtgaattttccatgaaccatgcattttcccttacacctgcacacaaaacaaaaataaaaaataaaataaatgaataaagaatctgtaacaaatgccttccggggaccgggtatacgtgtgtacgtcggtttttccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGCTG