Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggttcgacggttcgtgcatatgcgagcgtttctttaagagtggctcgtaatattattgcacttcttcgcacttacttaataatataatgccgccgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTCCTCACCGACGAGTGCCCCGGCGGCGCGTGCCTGGACGAGCCCGTGCACT

Basic information

species Zea mays
transcript GRMZM2G026956_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026956_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g44106.1 (Oryza sativa), 3'ss of exon 2
-------------gtacggttcgacggttcgtgcatatgcgagcgtttctttaagagtggctcgtaatattattgcacttcttcgcacttacttaataatataatgccgccgccgc--------------------gcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTCCTCACCGACGAGTGCCCCGGCGGCGCGTGCCTGGACGAGCCCGTGCACT
              | ||  ||| | | |  |  || |   |    |  |||     |  |    ||||  |  |       |  |  |||||   |  | |  | |  |  | ||                    ||||||||| |||| |||  || | || ||||||||||  || |||||||| ||||||||||||  ||||||||||||||||||||| || |||||||| ||||
gttcgatcgttcaattcgtctcgccagctgatatatcttttaatactcttttgttgctttccaagaataagacagtcaactctaacgtttactcgtttgtttgctactcctactgccaatttgggaattaaattctgcagGTGAAGTGCAGCGGCAACCCCTCTTGCTCCGGCAAGCCTGTGACCGTCGTCCTCACCGACCTGTGCCCCGGCGGCGCGTGCCTCGAAGAGCCCGTCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50327792|gb|CO522918.1|CO522918
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
EST: gi|101395276|gb|EB819568.1|EB819568
EST:     CAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGT
genomic: CAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTG-CTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGT
EST: gi|71768749|gb|DR966686.1|DR966686
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
EST: gi|74242240|gb|DT650154.1|DT650154
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
EST: gi|4885999|gb|AI677119.1|AI677119
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
EST: gi|78085232|gb|DV513625.1|DV513625
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGT
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACC-GGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGT
EST: gi|211085443|gb|FL299891.1|FL299891
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
EST: gi|50334672|gb|CO529798.1|CO529798
EST:     GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAG                         GTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC
genomic: GCAGTCCATCCATCTTCCAGAACGGCAAGGGCTGCGGCGCCTGCTATCAGgtacggttcg ... cgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattattgcacttcttcgcacttacttaataatataatgccgccgccgcgcagGTGAAATGCACCGGGCACGCGTCGTGCTCCGGCAGCCCGGTGACCGTGGTCCTCACCGACGAGTGCCCCGGCGGCGCGTGCCTGGACGAGCCCGTGCACT
                     acttacttaataatat  TA-rich tract