Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATATTACTGAATTTGGAGGTTCCGATGATACCAGTGAACCAAAAGTTTCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaactcgacttttaatatttgcaaatatacattgggcgaacttttctctgatggagcttattacctcaatcctggtgttctgaagatgactatg...

Basic information

species Zea mays
transcript GRMZM2G022061_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022061_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g27840.1 (Oryza sativa), 5'ss of exon 8
AATATATTACTGAATTTGGAGGTTCCGATGATACCAGTGAACCAAAAGTTTCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaactcgacttttaatatttgcaaatatacattgggcgaacttttctctgatggagcttattacctcaatcctggtgttctgaa-gatgactatg
|||| || ||||||||||||||||| ||||| |||||||| |  |||||| ||||||| ||||| ||||| |||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||| ||||| || ||| ||||  |    ||||||| |||| || | |||  |||
AATACATCACTGAATTTGGAGGTTCAGATGACACCAGTGACCTGAAAGTTGCAGGGATATCTCCACCTTCATCTCCAATACGAGTTGGCATACCTAACCGgtcggggaactcgacctttaatatttgcaaagatacattgggccatcttt-ctctgctgcagcatattgtcatggtcctggtattctaaaagctgaacatg