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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaatcagcgttagtttaactagagctccgattggaaatccacactactcttttagttagcagctgaaagaatgatgatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAGTGCCTTGCCATGTTGTAGTTAATTTATTTTATAGACTTTTTCATTCCTG

Basic information

species Zea mays
transcript GRMZM2G022061_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6918688|gb|AW400218.1|AW400218
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|161584781|gb|EY954043.1|EY954043
EST:     CGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: CGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|89250973|gb|DY622759.1|DY622759
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|37385048|gb|CF629639.1|CF629639
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACATAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|211251413|gb|FL479559.1|FL479559
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|37388853|gb|CF631641.1|CF631641
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|28987293|gb|CB351559.1|CB351559
EST:     AGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACCCTGAAAATATCCAGGCAGCCCCTAACAAAG
genomic: AGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|40335728|gb|CK369798.1|CK369798
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACATAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|113777294|gb|DW893575.1|DW893575
EST:     CTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: CTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaaatccacactactcttttagttagcagctgaaagaatgatgatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAGTGCCTTGCCATGTTGTAGTTAATTTATTTTATAGACTTTTTCATTCCTG
                   ttttagtta  TA-rich tract