Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtgacttagtagcttgtaatatttacctatttacttgtttttttcttcttgcaagaagtaatataatcaaattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G022061_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g27840.1 (Oryza sativa), 3'ss of exon 5
gtgcgtgacttagta-gcttgtaatatttacctatttacttgtttttttcttcttgcaagaagtaatataatcaaattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATC
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--------gttagtacatttgtagttttaaatatagcgtatgttgcttgcctgtagtgagagctgacaaaat-acactatgcagAAAAAGCTGAGCCGCAGAGAGAGAAGAAAAGTTTCTCAAATTGAGAGGGAAAGAGAGCGGGAAGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATC
upper sequence: GRMZM2G022061_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA01G39280.1 (Glycine max), 3'ss of exon 5
----gtgcgtgacttagtagcttgtaatatttacctatttacttgtttttttcttcttgcaaga-agtaatataatcaaattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAA---GGGTATCTTATCGTGATC
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gtaagtgaaagattaaattatgttttagtttttcatatttgaagatggctgtactgatgttttacaatgatatattataaatttgtagAGGAAGCTGAGTCGTAAGGAAAGAAGGAAGGCTTCTCAGATTGAAAGGGAGAGAGAGAGAGAAGCCACACGGATATCTGGAACTCGTGTGCTGCATCATG---
upper sequence: GRMZM2G022061_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G05990.1 (Glycine max), 3'ss of exon 5
-------------------gtgcgtgacttagtagcttgtaatatttacctattt----acttgtttttttcttcttgcaa-gaagtaatataatca-aattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAA---GGGTATCTTATCGTGATC
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gtaagtgaaaaagttcatagtaag-aattgaatatgtttttagtttttcatatttcaagatggccgtactgatacttacaatgatatattataattataaatttgtagAGGAAGCTGAGTCGTAAGGAAAGAAGGAAGGCTTCTCAGATTGAAAGGGAGAGAGAGAGAGAAGCCACACGGATATCTGGAACTCGTGTGCTGCATCATG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctatttacttgtttttttcttcttgcaagaagtaatataatcaaattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATC
aagaagtaatataatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtgacttagtagcttgtaatatttacctatttacttgtttttttcttcttgcaagaagtaatataatcaaattgtacagAAAAAAATGAGCCGTAGAGAAAGAAGGAAGGCTTCTCAGATTGAGCGGGAAAAGGAGCGGGAGGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG