1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGGTGGCACTGAGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattgaaaagaaaaactaccttgatgtatactgtaagtaaagatgtctgtttaacgtatatgttctcttgcaaaaag
species | Zea mays |
transcript | GRMZM2G017386_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|148996026|gb|EE035279.2|EE035279
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|5919441|gb|AW054538.1|AW054538
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|211334248|gb|FL383115.1|FL383115
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|5932735|gb|AW057096.1|AW057096
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|32935226|gb|CF040038.1|CF040038
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: GGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|32935252|gb|CF040064.1|CF040064
genomic: GGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: GGATGCTTGAGTCAGAAGAA-NACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|149005056|gb|EE039581.2|EE039581
genomic: GGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|86467803|gb|DY234173.1|DY234173
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|5901151|gb|AW042251.1|AW042251
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCEST: gi|83279062|gb|DV943070.1|DV943070
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGC
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|5650293|gb|AI920653.1|AI920653
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAANAAGTNCCATNCCGGGAG GATCGGAGAAATCGTAGAAGTCGCNCTGGAAGCATGGATATTGAGTCCATTEST: gi|4646617|gb|AI491437.2|AI491437
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|211277723|gb|FL440066.1|FL440066
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAARAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATTEST: gi|93011783|gb|EB637303.1|EB637303
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
EST: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAG GATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
genomic: TGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattg ... ttgcaaaaagGATCGGAGAAATCGTAGAAGTCGCACTGGAAGCATGGATATTGAGTCCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGTGGCACTGAGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAGGTTGTTAGGATGCTTGAGTCAGAAGAAGTACCATACCGGGAGgtaaggattgaaaagaaaaactaccttgatgtatactgtaagtaaagatgtctgtttaacgtatatgttctcttgcaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT