1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atccttagcttttgttgtccaatgaaaacagtaaatatttttatgctttcgcaaattgtggacacatttttgtctagatgataacccaccctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGGAAGTGGCTGATCCAAGCTTAGAGGCTAGACCCAGTATCCGGGCTCTCA
species | Zea mays |
transcript | GRMZM2G017386_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAG GTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGEST: gi|211334248|gb|FL383115.1|FL383115
genomic: AAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAGgtataaagtt ... ctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
EST: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAG GTCAATCTTGTTGAATGGCTTAARACAATGGTGGCCAATCGGAGGGCAGAGEST: gi|149005056|gb|EE039581.2|EE039581
genomic: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAGgtataaagtt ... ctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
EST: AGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAG GTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGEST: gi|5901151|gb|AW042251.1|AW042251
genomic: AGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAGgtataaagtt ... ctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
EST: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAG GTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGEST: gi|83279062|gb|DV943070.1|DV943070
genomic: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAGgtataaagtt ... ctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
EST: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAG GTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
genomic: AAACTGTGACAGGAAGGAATCCTGTTGACTACAGCCGATCTTCCAATGAGgtataaagtt ... ctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAG
ctttcgcaaattgtggacacatttttgtctagatgataacccaccctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGGAAGTGGCTGATCCAAGCTTAGAGGCTAGACCCAGTATCCGGGCTCTCA
tgataac putative branch site (score: 2)
cccaccctttcgtc CT-rich tract
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccttagcttttgttgtccaatgaaaacagtaaatatttttatgctttcgcaaattgtggacacatttttgtctagatgataacccaccctttcgtcagGTCAATCTTGTTGAATGGCTTAAAACAATGGTGGCCAATCGGAGGGCAGAGGAAGTGGCTGATCCAAGCTTAGAGGCTAGACCCAGTATCCGGGCTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT