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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAATTTAGAGCAGTGGCTTCATGGAGCTATGCATCAGCGTGGTGTTTTTAGCTGGGAAAATCGCATGAAGGTTGTAACAGGCACTGCAAAAGCgtaagtttcaatcttaatctgtaagttacctacatagtttcctgtgtttttagctgtataaaattggttcttatttttctaattatgatggttgcag

Basic information

species Zea mays
transcript GRMZM2G017386_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017386_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g44110.1 (Oryza sativa), 5'ss of exon 5
ACAATGGTAATTTAGAGCAGTGGCTTCATGGAGCTATGCATCAGCGTGGTGTTTTTAGCTGGGAAAATCGCATGAAGGTTGTAACAGGCACTGCAAAAGCgtaagtttca-----atcttaatctgtaagttacctacatagtttcctgtgtttttagctgtataaaattggttcttatttttctaattatgatggttgcag
| || ||||| || |||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||      ||| | ||| |||| |||  |  | |||||   |||    |  ||| | |   |   | ||       |||| |||||    |   
ATAACGGTAACTTGGAGCAGTGGCTTCATGGAGCTATGCGCCAGCATGGTGTTTTTAGCTGGGAAAATCGTATGAAGGTTGTTATCGGCACTGCAAAAGCgtaagtttcatcagcttctcagtctataagatac--atgttgtttctgttgtcggaatttgtttgatgata--ttttggcgggttaatcatgatcacag---

upper sequence: GRMZM2G017386_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAATGGTAATTTAGAGCAGTGGCTTCATGGAGCTATGCATCAGCGTGGTGTTTTTAGCTGGGAAAATCGCATGAAGGTTGTAACAGGCACTGCAAAAGCgtaagtttcaatcttaatctgtaagt--tacctacatagtttcctgtgtttttag--ctgta--taaaattggttcttatttttctaattatgatggttgcag
||||||| || ||||| ||||||||||||||||||||||  ||   |||     |||  |||||    |||||||||||| |    || || || || ||||||||     ||| || ||| || |  |  |  |||       || |||  |||  | |    ||| || ||   |||  |     |||   |||    |  
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaa-ctgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5901151|gb|AW042251.1|AW042251
EST:     AGGCACTGCAAAAGC                         GCTTGCTTACCTTCATGAAGCTATTGAGCCAAAAGTTGTACATCGAGATAT
genomic: AGGCACTGCAAAAGCgtaagtttca ... atggttgcagGCTTGCTTACCTTCATGAAGCTATTGAGCCAAAAGTTGTACATCGAGATAT