1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgggcatacattctcatgtacaacattttgatcataacggaaaaacggatgcttgtgtctcttgtgatcaatctttttgttgctatagtaattattgattgttcggatatcaatgtttcttgaggttaaacatgtatcctgcagGAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTAAAAAAAGCTGCTGAAGCCCTACACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGCA
species | Zea mays |
transcript | GRMZM2G012284_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTTGTTCGTCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAG GAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTNNNNNNNGCTGCTGAAEST: gi|38568991|gb|CF974876.1|CF974876
genomic: CATTTGTTCGTCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAGgtgggcatac ... tatcctgcagGAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTAAAAAAAGCTGCTGAA
EST: CATTTGTTCGTCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAG GAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTNNNNNNNGCTGCTGAA
genomic: CATTTGTTCGTCGTCCAAAAGCTGTAATTACACGCTCACAATATATAAAGgtgggcatac ... tatcctgcagGAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTAAAAAAAGCTGCTGAA
aattattgattgttcggatatcaatgtttcttgaggttaaacatgtatcctgcagGAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTAAAAAAAGCTGCTGAAGCCCTACACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGCA
tattgat putative branch site (score: 259)
atatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcatacattctcatgtacaacattttgatcataacggaaaaacggatgcttgtgtctcttgtgatcaatctttttgttgctatagtaattattgattgttcggatatcaatgtttcttgaggttaaacatgtatcctgcagGAAGCAACTGAACTGGGAAAGAAGGCCAGGGAGTTAAAAAAAGCTGCTGAAGCCCTACACCAAGAAGAAAGAAGTGGGAACAAGGGCCGGAAATGGCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT