1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgcatcgagcaatatgtttttgttttcattaacttgtgcaattttaatactgtatagatttgaaaggcctgtgaatctttatgtgctgcatcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAATGTTGGAAATGAGAAAATTGTGGAGAAGAAGAGAGCTAACCCTGTTGC
species | Zea mays |
transcript | GRMZM2G006672_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|91052495|gb|EB162913.1|EB162913
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|76923155|gb|DV169360.1|DV169360
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|71763037|gb|DR960974.1|DR960974
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|211220297|gb|FL433488.1|FL433488
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|89755627|gb|DY685981.1|DY685981
genomic: GCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTTTGCAGGAAEST: gi|76284647|gb|DV024215.1|DV024215
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAEST: gi|71433819|gb|DR814869.1|DR814869
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
EST: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
genomic: GGCTAATGTAGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtagggtttc ... atcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAA
taatactgtatagatttgaaaggcctgtgaatctttatgtgctgcatcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAATGTTGGAAATGAGAAAATTGTGGAGAAGAAGAGAGCTAACCCTGTTGC
ttttaat putative branch site (score: 170)
catcttttc putative PPT
tatagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatcgagcaatatgtttttgttttcattaacttgtgcaattttaatactgtatagatttgaaaggcctgtgaatctttatgtgctgcatcttttcagGCAATGTGGGTCAGGACCATGCTATCTTCGAGCAAGGTGCTTCTGCAGGAAATGTTGGAAATGAGAAAATTGTGGAGAAGAAGAGAGCTAACCCTGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
ctgcatc
- - - - - - - - gtttttg
- - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgc