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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA

Basic information

species Zea mays
transcript GRMZM2G006672_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g38200.1 (Oryza sativa), 3'ss of exon 1
-----taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
      || | ||| ||   |  ||| ||  ||   ||||  ||||   |||||||| |  |||| |   ||| |   |  ||| | |||   | ||||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||| |||||  ||||||||||||| || ||||||||||| || |
tttctgaaatagaacgtatgta-aatgtttttgtcacttttcatttcatcatctaaagga-atttttttctat-atggt--actgttactaaatggatttactagGTGATCACAAAGTTCTGCTCTGAAAGGATTGCCAAGTATGCTTTTGAGTACGCGTACCTCAACAACAGAAAGAAAGTGACTGCCGTGCATAAAGCAAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G08920.1 (Glycine max), 3'ss of exon 1
-----taatttgaaagtgcatgcaatattgctgctcctttctattttgccatc-taaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
     | || | |   |  ||   ||||  |      ||      ||| |||  | ||  |    | |  |  || |   | |   |||  ||      ||||||||| |||||||| |||||||| ||  | ||||| || ||||||||||||||||| ||||| || ||  ||||||| ||||| || ||||| ||||| || |
ctttttcatctaatcttcaattatatatctcatgaagttagcgccttgacattgtgaactgtgagttttatgtttgcacctcatactaatctt------ttgctagGTAATAACAAAGTTCTGCTCAGAGCGCATTGCTAAATATGCTTTTGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G35260.1 (Arabidopsis thaliana), 3'ss of exon 1
----taatttgaaagtgcatgcaatattgctgctcctttctat-tttgc-----------catctaaaaggcatttctccttattac---tatttactataactttgttgatttgct-agGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
     ||||   |  |     |    ||   | | |  ||| | ||||            | | |  |||   | | |   | |||    |  ||  | | |   | ||  | |||| ||||||| || || ||||| || ||  | |||||||||||||||||||||||||| ||||| |||||  | |||||||| ||||| |||||||| || || |
gtgagaattccgatttctgctcctcgttttggattcaatctgtatttgtggaatcatcttcgtttgcaagtggtctttgtatgttatgtgtgattgttctgatcctatttctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGAAGAAAGTTACAGCGGTGCATAAGGCTAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT2G17130.2 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------taatttgaaagtgcatgcaat---attgctgctcctttctattttgccatctaaa----aggcatttctcct-tattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA------------
                         |  ||||       |||  ||   |||  |  |  |||     | |   |  ||     ||   ||  |  | ||| |    |  || | |   |  || |||| |||||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||| ||| | |||||  | |||||||| ||||||||||| || || ||||            
gtgcaatttctcagtttttgttgattgttttggttacaaatgtgatttgattcatagtgatttggtagtagatgtgaaagttggagatgttcatgttatatcaaagatgtctctgatgctaatgttttggtaggtgattacaaagTTCTGTTCAGAGCGTATTGCAAAGTATGCGTTTGAGTATGCCTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCACAAGGCTAATATCATGAAATTGG

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G35650.1 (Arabidopsis thaliana), 3'ss of exon 1
taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
       |||    ||  |||  |   | |  ||| ||        || |||  |   | |   || |   ||  |  | |   |   ||| ||   |||||||||||||| || || ||||| ||||| || |  ||||| ||||||||||| || || |||||| | ||||||||||| || || |||||||| || |
-----gtaaaccatatataattatagggattgttttta-------gtccaaattgtgatcccttttgta--tacatgatgttgttgaattgtttgtgtagGTGATAACAAAGTTTTGTTCTGAGAGAATAGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTGCTGTTCATAAAGCTAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT2G17130.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------taatttgaaagtgcatgcaat---attgctgctcctttctattttgccatctaaa----aggcatttctcct-tattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
                         |  ||||       |||  ||   |||  |  |  |||     | |   |  ||     ||   ||  |  | ||| |    |  || | |   |  || |||| |||||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||| ||| | |||||  | |||||||| ||||||||||| || || ||||
gtgcaatttctcagtttttgttgattgttttggttacaaatgtgatttgattcatagtgatttggtagtagatgtgaaagttggagatgttcatgttatatcaaagatgtctctgatgctaatgttttggtagGTGATTACAAAGTTCTGTTCAGAGCGTATTGCAAAGTATGCGTTTGAGTATGCCTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCACAAGGCTAATA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv03s0038g03120.t01 (Vitis vinifera), 3'ss of exon 1
--taatttgaaa-gtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatt-tctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
  ||  | | |   |  ||  | | ||   | |  ||| ||   ||   | |    | || | |    || |  || ||   | | |    | || ||||||||||||| ||||| |||||||| ||| |||||||||| ||||| ||||||||| | ||||| ||||| ||||||||||||||||| ||||| |||||||| |
tttagatagcattataaatttagtgtttaagatt-tttataaagtgttgtttttccgacagtatggaattgtgtctgtt---tctgatccagctgctttgctagGTGATTACAAAGTTCTGCTCCGAACGAATTGCAAAATATGCCTTTGAGTATTCTTACCTAAACAACCGAAAGAAAGTGACAGCTGTGCACAAAGCCAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0210g00180.t01 (Vitis vinifera), 3'ss of exon 1
taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttat-tactatttactataactt----tgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
 |  ||        || |  |  |  ||||  |    |  |||| ||||    |||||| | |  | | || ||| |  | |  ||     || | ||||||||||| |||||||| ||||| || ||  | |||||||| ||||||||||||||||||||||| |||||  |||||||||||||||| ||||| ||||| || |
gaggttaccttcctattctttgcta-tgcttttcatgaacttgc-atcttg--ggcattgcacagtctgtagtatgt-ttgtggctcatgatgctcatttgctagGTAATAACAAAGTTCTGTTCAGAGCGCATTGCAAAATATGCTTTTGAGTATGCATACCTAAACAACAGAAAGAAAGTGACAGCTGTGCACAAAGCAAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S212_85V6.2 (Physcomitrella patens), 3'ss of exon 2
-----------taatttgaa-agtgcatgcaatattgc-tgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
           ||  ||| | | | | ||    ||  | ||||  |||||   |||   || |      || | || |   | |     | | | |          ||   |||||||||| ||||||||||| ||  ||||||||||||| || ||||||||||| || || ||||| || |||| ||| |||||||| ||||| ||||| |
gcgactctatgtatattgcataatacctgtcgaatgacctgctggtttctgccttgttgtcaa------atatgtcgtggatgcctcacagtgtta-------agcttttcagGTGATAACCAAATTCTGCTCCGAGCGAATTGCAAAGTACGCCTTTGAGTATGCTTATCTCAACAACCGTAAGACAGTAACAGCAGTACATAAGGCCAACA

upper sequence: GRMZM2G006672_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S152_81V6.1 (Physcomitrella patens), 3'ss of exon 1
------------taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
            | | |   | ||| ||| |   |  ||||   ||||    ||||||||||  ||          ||  |   |||    ||          | |||  ||||||| |||||||||||||| ||  | || ||||| ||||||||||| |||||||| |||||||| || ||||  || ||||||||||| || || || |
caagagggcttgtcagtgtcatgtgtatg-atcgtatctgcaggtttcctacttgccatctatgaga---------ttgatgagattcctaatggtgcca--aaattgtcagGTGATTACAAAATTCTGCTCCGAGCGCATAGCAAAATATGCTTTTGAATATGCATATCTTAACAACCGCAAGACGGTTACAGCAGTGCACAAGGCGAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439984|gb|DR821034.1|DR821034
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|74233555|gb|DT641469.1|DT641469
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|71448732|gb|DR829782.1|DR829782
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|91057038|gb|EB167456.1|EB167456
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|74234931|gb|DT642845.1|DT642845
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|71446644|gb|DR827694.1|DR827694
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|91052496|gb|EB162914.1|EB162914
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|87157532|gb|DY402321.1|DY402321
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGTAAGAATTGCAAAGTATGCTTTTG
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTG
EST: gi|71774538|gb|DR972416.1|DR972416
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|71448447|gb|DR829497.1|DR829497
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|78080559|gb|DV508971.1|DV508971
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTNGAA-GAATTGCAAAGTATGCTTTTGAGTA
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCT-GAAAGAATTGCAAAGTATGCTTTTGAGTA
EST: gi|91877636|gb|EB407593.1|EB407593
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|71433820|gb|DR814870.1|DR814870
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|71439696|gb|DR820746.1|DR820746
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|76284648|gb|DV024216.1|DV024216
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
EST: gi|76923156|gb|DV169361.1|DV169361
EST:     ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG                         GTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 127

GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 308

GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 219

GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... gatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA
                   ttattactatttacta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taatttgaaagtgcatgcaatattgctgctcctttctattttgccatctaaaaggcatttctccttattactatttactataactttgttgatttgctagGTGATAACAAAATTCTGCTCTGAAAGAATTGCAAAGTATGCTTTTGAGTATGCATACCTTAACAATCGAAAGAAAGTGACAGCAGTGCATAAAGCCAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - -tgcatgc
- - - - - - - - - - - - gctgctc
- - - - - - - - - - - - - - - - - - - - -tgccatc