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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAGgtagttagtttcatctactttgtgcctatcaagattttactggttttagttttattaagttaccacttatcttgtag

Basic information

species Zea mays
transcript GRMZM2G005869_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005869_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g21620.1 (Oryza sativa), 5'ss of exon 3
ACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAGgtagttagtttcatctactttgtgcctatcaagattttactggtttta-gttttattaagttaccacttatcttgtag
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ACAAAATACCGACTTTACCTTGTGTTGGACTTCATAAATGGGGGCCATCTTTTCTTCCAGCTCTACCAACAGGGTTTGTTTAGgtaatttcattacattattttatgtttattcctatcgctttgcatgaacatttaattaagcaaccttttgtctgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338397|gb|DN205370.1|DN205370
EST:     ATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAG                         GGAGGAGCTTGCACGCATCTACGCTGCTGAAATTGTATCTGCCGTAGCCCA
genomic: ATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAGgtagttagtt ... tatcttgtagGGAGGAGCTTGCACGCATCTACGCTGCTGAAATTGTATCTGCCGTAGCCCA