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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccatgttcagatgctatacattttgtaaaatattgtcatttacgcgcttctgaaatattgtcatttatccttctgaaatattgtcatttatgcgcttattctttgttgccatgttcagatgctatacattttgtagtatccttttggccagtattaatcactcacctattttggcagACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAG

Basic information

species Zea mays
transcript GRMZM2G005869_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005869_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g21620.1 (Oryza sativa), 3'ss of exon 2
gtaggccatgttcagatgctatacattttgtaaaatattgtcatttacgcgcttctgaaatattgtcatttatccttctgaaatattgtcatttatgcgcttattctttgttgccatgtt--cagatgctatacattttgtagtatccttttggccagtattaatcactcacctattttggcagACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAG
                                                                              |      || |||| | || |  | |||||||||| || | |  ||       || |||||  |||   ||| |  | | | |||| | |     |   |||||||||||| |||||||||||||||||  ||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||
-----------------------------------------------------------------------------gtatgcatttatcatctctgtg--tgttctttgttgtcaagctatcatgcatgttatatttttcagt---cttgtcccaaattttaaacccagtatttacttggcagACAAAATACCGACTTTACCTTGTGTTGGACTTCATAAATGGGGGCCATCTTTTCTTCCAGCTCTACCAACAGGGTTTGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338397|gb|DN205370.1|DN205370
EST:     TGACAAAGGTTGACCATCCTTTCGTCGTGCAGCTGAGGTACTCCTTTCAG                         ACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTC
genomic: TGACAAAGGTTGACCATCCTTTCGTCGTGCAGCTGAGGTACTCCTTTCAGgtaggccatg ... attttggcagACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacattttgtagtatccttttggccagtattaatcactcacctattttggcagACAAAGTACCGACTTTACCTTGTCCTGGACTTCATAAACGGGGGTCATCTCTTCTTCCAGCTTTACCACCAGGGTTTATTTAG
                                    cactcac  putative branch site (score: 2)
                                          cctatttt  CT-rich tract
                           agtattaat  TA-rich tract