1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgtgtaaaactcctgctgcagcaaaacaatcaaggacagcagcagattgtcttacaatgatcacgtcatatttctcaacaccgtgttatttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTGATGAAATCCAGAAGCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGAC
species | Zea mays |
transcript | GRMZM2G005869_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCTGCCAACATATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|60338397|gb|DN205370.1|DN205370
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|78023503|gb|DV491890.1|DV491890
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|33285635|gb|CF075430.1|CF075430
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|211038904|gb|FL471518.1|FL471518
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|4967203|gb|AI692097.1|AI692097
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: T-AAGCTGCCAACTTATTTATCTAGTGAAGTTCNCTCTCTGTTGAAAGGA TTACTGCNCAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|61236452|gb|DN586205.1|DN586205
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|31628500|gb|CD526638.1|CD526638
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTEST: gi|211210610|gb|FL436839.1|FL436839
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
EST: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGA TTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
genomic: TAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGTTGAAAGGAgtaagttgct ... tttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGT
agattgtcttacaatgatcacgtcatatttctcaacaccgtgttatttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTGATGAAATCCAGAAGCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGAC
gtcttac putative branch site (score: 3)
tttatttc putative PPT
tgttatttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgtaaaactcctgctgcagcaaaacaatcaaggacagcagcagattgtcttacaatgatcacgtcatatttctcaacaccgtgttatttatttcagTTACTGCACAAAGAAGCTGGCAGGCGGCTGGGAAGCGGACCAGGCGGCAGTGATGAAATCCAGAAGCACAAGTGGTTCAAGTCTGTAAACTGGAAGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA