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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcctaccggaatatttatcgatgtgctcctaggtgatacagattcgttgcagatgaataagaatgccagtgctgattgggcccaactttaattgacagGTCCTTTTTCAGATATCGCTAGGGATTG

Basic information

species Zea mays
transcript GRMZM2G005869_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33771128|gb|CF272789.1|CF272789
EST:     CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAG                         GTCCTTTTTCAGATATCGCTAGGGATTG
genomic: CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAGgtacgtgatt ... taattgacagGTCCTTTTTCAGATATCGCTAGGGATTG
EST: gi|33770778|gb|CF273072.1|CF273072
EST:     CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAG                         GTCCTTTTTCAGATATCGCTAGGGATTG
genomic: CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAGgtacgtgatt ... taattgacagGTCCTTTTTCAGATATCGCTAGGGATTG
EST: gi|211080755|gb|FL099683.1|FL099683
EST:     CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAG                         GTCCTTTTTCAGATATCGCTAGGGATTG
genomic: CCCGTCGCCGGTGCCTACCGTTCCCGTCGCCGCCCGTCCTCTCTACGGAGgtacgtgatt ... taattgacagGTCCTTTTTCAGATATCGCTAGGGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttgcagatgaataagaatgccagtgctgattgggcccaactttaattgacagGTCCTTTTTCAGATATCGCTAGGGATTG
                                        aactttaatt  TA-rich tract