1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatcctagcctgaagttattaactgatgtaccctcctcattgttaatttaagtaagctgcccattttgtaaaataacaatactattattctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACGTTTCCTGTTCAGCGGGAAACAGCGGCAGCTTCCCTCCCTGCCTCCTTCC
species | Zea mays |
transcript | GRMZM2G005869_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTTTTCAGATATCGCTAGGGATTG CCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACGEST: gi|33770778|gb|CF273072.1|CF273072
genomic: GTCCTTTTTCAGATATCGCTAGGGATTGgtgagttgta ... ctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACG
EST: GTCCTTTTTCAGATATCGCTAGGGATTG CCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACGEST: gi|211080755|gb|FL099683.1|FL099683
genomic: GTCCTTTTTCAGATATCGCTAGGGATTGgtgagttgta ... ctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACG
EST: GTCCTTTTTCAGATATCGCTAGGGATTG CCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACG
genomic: GTCCTTTTTCAGATATCGCTAGGGATTGgtgagttgta ... ctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACG
aatttaagtaagctgcccattttgtaaaataacaatactattattctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACGTTTCCTGTTCAGCGGGAAACAGCGGCAGCTTCCCTCCCTGCCTCCTTCC
aaataac putative branch site (score: 27)
ttctgcct putative PPT
attttgtaaaataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcctagcctgaagttattaactgatgtaccctcctcattgttaatttaagtaagctgcccattttgtaaaataacaatactattattctgcctgcagCCCATATAAAAGTTGATCTCATGAATTCGGGAAGAACAGCGGCATCCAACGTTTCCTGTTCAGCGGGAAACAGCGGCAGCTTCCCTCCCTGCCTCCTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT