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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGCAGCCGATGCGGTCGTGCTCACCTACGCCTGCGACCGGCCCGCCACACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgcgattcgatgcagtgtggcgtaggtctagatcgcttgcgtttgagtgtctctagggttggcccattgtgatttctcttgtctggtttatgtgatacag

Basic information

species Zea mays
transcript GRMZM2G004459_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g59590.1 (Oryza sativa), 5'ss of exon 2
CCAGGCAGCCGATGCGGTCGTGCTCACCTACGCCTGCGACCGGCCCGCCACACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgcgattcgatgcagtgtggcgtagg-tctagatcgcttgcgtttgagtgtctctagggttggcccattgtgatttc-tcttgtctg--gtttatgtgatacag
|||||| || || ||||| |||||||| |||||||||||  |||||||||| ||||||||||||||  | |||||||| ||||||||||| || || |||||                     |||||||||| | | ||||| | |   | | |||  |  | ||  || ||  |||||| || | |||  ||  ||||   |   ||||
CCAGGCGGCGGACGCGGTGGTGCTCACGTACGCCTGCGATAGGCCCGCCACGCTGGAGCGGCTCAGCACATTCTGGCTCCCCGAGCTCCGCCGCCTCCAGgtt-------------------cgtggcgtaggatttggatcggtcgtaat-gggtggtttcatgggcggtccgatgtgatctcgtgttgcttgctgtttgcctatcacag

upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 2
CCAGGCAGCCGATGCGGTCGTGCTCACCTACGCCTGCGACCGGCCCGCCACACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgcg-attcgatgcagtgtggcgtaggtctagatcgcttgcgtttgagtgtctctagggttggcccattgtgatttctcttgtctggtttatgtgatacag
|||| | || |||| ||| ||||||||||||||||| ||||  || || || |||||||||||||| || |||||| | ||||| |||||||| || ||||| | ||   | | ||  |||     ||  | | |    |    |   | || | | | ||    || ||| |||   | ||| |  ||  ||| | |          
CCAGTCGGCGGATGTGGTGGTGCTCACCTACGCCTGTGACCAACCTGCGACGCTGGAGCGGCTCAGCTCATTCTGGTTCCCCGAACTCCGGCGCCTCCAGgtgaggctctgcactcactgc----cggaattgattggtaattttgtggattaattttgtccgctgt-ggctcat---gttttgttctgcttggctcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518364|gb|FL160582.1|FL160582
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACG
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACG
EST: gi|31361614|gb|CD445971.1|CD445971
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|78084949|gb|DV513342.1|DV513342
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|211289495|gb|FL459844.1|FL459844
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|211153232|gb|FL160597.1|FL160597
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|211289494|gb|FL459843.1|FL459843
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|91053299|gb|EB163717.1|EB163717
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
EST: gi|211153243|gb|FL160608.1|FL160608
EST:     CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAG                         TTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA
genomic: CACTGGAGCGGCTCAGTTCGTTCTGGCTTCCCGAGCTCCGGCGACTTCAGgtaatgccgc ... tgtgatacagTTGAAGGCTCCAGTTATCGTGGTGGGGTGCAAGCTGGACCTGAGGGACGAA