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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCCCGAGAACGTACCACGCGTCATGCCCCCCACCCGCCTCCCCGCCGACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgaccgcgtccccctcctaccgcgcatctcggattcgttagatcttgacgggatggatgaatacctggggttgagttgattttgcgcgtccctttgattgcag

Basic information

species Zea mays
transcript GRMZM2G004459_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g59590.1 (Oryza sativa), 5'ss of exon 1
AGTTCCCCGAGAACGTACCACGCGTCATGCCCCCCACCCGCCTCCCCGCCGACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgaccgcgtccccctcctaccgcgc----atctcggattcgttaga------tcttgacgggatggatgaatacctggg----gttgag---ttgattttgcgcgtccctttgattgcag----------------------------------------
  ||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| || |||||||   |  ||| |   | |     | |||||      |   |||   |  |        | | |   | | |||   |   |||     |||| |   |||   |||  |||| |  ||||||                                           
CCTTCCCGGAGAACGTCCCCCGCGTCATGCCGCCCACCCGCCTCCCCGCCGACTACTTCCCCGACCGCGTCCCAATCACCATCGTCGACACCTCCTCCAGgtccgctcacctccctcgcgctagatcgcgccgcggcccgcgatgaatcgggggtgttcccttagtcggtagatttgtggatggactccgttgcgattttggccttgttcgtctcggtgattgattccatttctgtgtggttgattccatttctgtgtggatgcag

upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 1
-----------------------------------------------------------------------------AGTTCCCCGAGAACGTACCACGCGTCATGCCCCCCACCCGCCTCCCCGCCGACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgaccgcgtccccctcctaccgcgcatctcggattcgttagatcttgacgggatggatgaatacctggggttgagttgattttgcgcgtccctttgattgcag
                                                                                 ||  |   |||| || |||||  ||||||||||||||||||||| |||||||||| |||| ||| |||||||||| ||| ||||||| || |||||||  ||| || ||    |||||   |      |  ||| |   ||   | |||  |||     ||   |  | |  | |  ||||   | |  |      ||||| |||
TGGCGGGCAAGCAGAGCTTGCGAGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTGTCCGCCGCCACCGAGGCGACGTCCCCCGCgtactgccccccacccgcctccccgtcgactacttcgccgaccgcatccccatcaccatcgtcgacacctcctccaggtcctcc-actgc----ccctcacgctagat-ttgcgggtgtatttttttttgttgggggatttgtggattttgattcg--ttgacaattc-tgaattgctgatt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518364|gb|FL160582.1|FL160582
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTAYNATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|211153242|gb|FL160607.1|FL160607
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|31361614|gb|CD445971.1|CD445971
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|78084949|gb|DV513342.1|DV513342
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|211289495|gb|FL459844.1|FL459844
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|211289494|gb|FL459843.1|FL459843
EST:     TATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: TATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
EST: gi|91053299|gb|EB163717.1|EB163717
EST:     GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAG                         CCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT
genomic: GACTACTTCCCCGATCGCGTCCCCATCACTATCATCGACACGTCGTCCAGgtattccgac ... ttgattgcagCCCGGAGCAGAAGCCGAAGTTGATCGCCGAGTGCCAGGCAGCCGATGCGGT