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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTAATACTGCGAGAGATACCTGAAGGTGACGTGAGATCGTTACTTTCTGACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactcctgttgagtatttatttgttcataatctgcaagtctcacaatacagtttatagtgactgactgttctccctttttgtgtatcagtcaatt...

Basic information

species Zea mays
transcript GRMZM2G004459_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g59590.1 (Oryza sativa), 5'ss of exon 11
CGCTAATACTGCGAGAGATACCTGAAGGTGACGTGAGATCGTTACTTTCTGACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactcctgttgagtatt-tatttgttcataatctgcaagtc-tcacaatacagtttatagtgactgactgttctccctttttg-tgtatcagtcaatt
| ||  || | |||||||| ||||||| ||| || ||| | |||||  |||| |||||||| ||||| || ||||||||||||||||| ||||| ||||||||   | ||      | | || ||||| || || | |   || || |||    |  || |  ||| ||||  |  | | ||| || | |||| ||       
CACTTGTATTTCGAGAGATTCCTGAAGATGATGTCAGACCATTACTGGCTGATAGGGAATCCTTGGCACCCTGTGATGTAGCAGTATTCGTTTATGATAGgtatgaattctgccaaattgttctatttatttatgaccaagaaatcctcagtgcattgtctgaagtaactggattctttacctattagctgtagcaactc---

upper sequence: GRMZM2G004459_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g62570.1 (Oryza sativa), 5'ss of exon 12
CGCTAATACTGCGAGAGATACCTGAAGGTGACGTGAGATCGTTACTTTCTGACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactcctgttgagtat----ttatttgttcataatctgcaagtctcacaa--tacagttt------atagtgactgactgttctccctttttgtgtatcagtcaatt
| ||  |  ||||||| ||  |||||||||| ||  || | ||||| || || | |||||| ||||| || ||||||||||||||| ||||||| ||||||||  |  |||  |  | |||     | ||| |||||   |   |||| |    |  | || |||      || || |||||   |||| ||||||| |  ||         
CACTTGTGATGCGAGAAATTTCTGAAGGTGATGTTGGACCATTACTATCAGATAAGGAATCTTTGGCACCCTGTGATGTAGCAGTAATTGTTTATGATAGgtatgctatccactgaattatccccctctttattcatggcc-ataagttttgtcagttgcatttttctttcatggtcactga--attcttcctttttattcat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31362359|gb|CD446716.1|CD446716
EST:     TGTGATGTAGCAGTATTTGTTTACGATAG                         CTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
genomic: TGTGATGTAGCAGTATTTGTTTACGATAGgtacacactc ... ctattggcagCTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
EST: gi|20512938|gb|BQ280124.1|BQ280124
EST:     GACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAG                         CTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
genomic: GACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactc ... ctattggcagCTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
EST: gi|31351610|gb|CD435967.1|CD435967
EST:     GACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAG                         CTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
genomic: GACAGGGAATCGTTGGCGCCATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactc ... ctattggcagCTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
EST: gi|31352762|gb|CD437119.1|CD437119
EST:     CATGTGATGTAGCAGTATTTGTTTACGATAG                         CTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC
genomic: CATGTGATGTAGCAGTATTTGTTTACGATAGgtacacactc ... ctattggcagCTGCGATGAATATTCATGGCAAAGAGCTAGAGACTTGCTTGTGCAAGTGGC