1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgtatatacatttttatgctttctacattacattttcgtctggaattttgttataaagcgtattctgtttcttgctctcctgactcttgtaatacctcgatgtgacagCTTTGGGGGGATGATGAGGTCAGTCAAATTGTGCAATATTGATTGTTTCACTGCAGCTTCCGGGAGCTGATAATATCGGGAGGTTAGTACTTCGTAGTGT
species | Zea mays |
transcript | GRMZM2G003718_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGGEST: gi|50333769|gb|CO528895.1|CO528895
genomic: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
EST: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCCCGGEST: gi|78083603|gb|DV511996.1|DV511996
genomic: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
EST: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGGEST: gi|76293747|gb|DV033315.1|DV033315
genomic: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
EST: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTACAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGGEST: gi|71434066|gb|DR815116.1|DR815116
genomic: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
EST: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
genomic: ATCCGGGACAAACCAAGATCAAGCATTGATCATAGACCTAGCATTGATCGACGGGAGAAACCTAGGGGAAGTATAGACAGGAGAGATAAAAACAGAAAGAGTATTGATCAGCTTGACAAACCACGG
taaagcgtattctgtttcttgctctcctgactcttgtaatacctcgatgtgacagCTTTGGGGGGATGATGAGGTCAGTCAAATTGTGCAATATTGATTGTTTCACTGCAGCTTCCGGGAGCTGATAATATCGGGAGGTTAGTACTTCGTAGTGT
tcctgac putative branch site (score: 10)
ttgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatatacatttttatgctttctacattacattttcgtctggaattttgttataaagcgtattctgtttcttgctctcctgactcttgtaatacctcgatgtgacagCTTTGGGGGGATGATGAGGTCAGTCAAATTGTGCAATATTGATTGTTTCACTGCAGCTTCCGGGAGCTGATAATATCGGGAGGTTAGTACTTCGTAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT