1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtataaattgagcttttttctacgaaagtactttccatttacccctcttctcatgctatttaatgagttccaacttcccttgtgcatgactgaccaatttaattccatttgattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTCTAGAAACATATGGAGCCTCTGAAGAAAACATCATTCTATATGGTCAAT
species | Zea mays |
transcript | GRMZM2G003718_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTEST: gi|71440952|gb|DR822002.1|DR822002
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
EST: TTATGACTATTCTGGGGACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTEST: gi|148938391|gb|EC882706.2|EC882706
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCT
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTEST: gi|50333770|gb|CO528896.1|CO528896
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTEST: gi|71434067|gb|DR815117.1|DR815117
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTEST: gi|50324710|gb|CO519836.1|CO519836
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTEST: gi|78089451|gb|DV517825.1|DV517825
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
EST: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAG CCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
genomic: TTATGACTATTCTGGGTACGGGCAATCATCTGGGAAGgtataaattg ... gattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTT
agttccaacttcccttgtgcatgactgaccaatttaattccatttgattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTCTAGAAACATATGGAGCCTCTGAAGAAAACATCATTCTATATGGTCAAT
aatttaattccattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaattgagcttttttctacgaaagtactttccatttacccctcttctcatgctatttaatgagttccaacttcccttgtgcatgactgaccaatttaattccatttgattctgcagCCAAGTGAACAAAATACTTATGCTGATATAGAAGCTGTGTATAGGTGTCTTCTAGAAACATATGGAGCCTCTGAAGAAAACATCATTCTATATGGTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA