1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actcttttaagtaattttcagactaagtatcttccaataatttaaaatcaaacaattgtcgaacatggtttacttgtggcattcgtttctcaccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGATGCAGAAGCCTCTTTAAAACAAATGGTAGAAGAGTTGATGATGGATACTG
species | Zea mays |
transcript | GRMZM2G003057_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAG GCAATGCGCTTAGGACAGGGTTTCAAAAGATATTTGGCAATACACGATGATEST: gi|149100496|gb|EE186576.2|EE186576
genomic: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAGgtaagagtgt ... caccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGAT
EST: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAG GCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGATEST: gi|211532554|gb|FL475961.1|FL475961
genomic: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAGgtaagagtgt ... caccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGAT
EST: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAG GCAATGCGCTTAGGACAGGGTTTCAAAAGATATTTGGCAATACACGATGATEST: gi|211367475|gb|FL445555.1|FL445555
genomic: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAGgtaagagtgt ... caccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGAT
EST: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAG GCAATGCGCTTAGGACAGGGTTTCAAAAGATATTTGGCAATACACGATGATEST: gi|60340900|gb|DN207873.1|DN207873
genomic: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAGgtaagagtgt ... caccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGAT
EST: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAG GCAATGCGCTTAGGACAGGGTTTCACAAGATATTTGGCAATACACGATGAT
genomic: CTGGGCTTCATGTGCTTTCGAATGCTGCAATTAATTCCCCTTGGCCAAAGgtaagagtgt ... caccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGAT
aatcaaacaattgtcgaacatggtttacttgtggcattcgtttctcaccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGATGCAGAAGCCTCTTTAAAACAAATGGTAGAAGAGTTGATGATGGATACTG
ttctcac putative branch site (score: 15)
ttcgtttctc CT-rich tract
aacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcttttaagtaattttcagactaagtatcttccaataatttaaaatcaaacaattgtcgaacatggtttacttgtggcattcgtttctcaccgtgcagGCAATGCGCTTAGGACAGAGTTTCAAAAGGTATTTGACAATACACGATGATGCAGAAGCCTCTTTAAAACAAATGGTAGAAGAGTTGATGATGGATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA