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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACCGCTGGTCGGCTATGTGCATCGCGGCATGGGCGTGGCACTGCCACCCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgcccctcccctcgccgtccatctccacatccccatctctctctctctctaaatctctaagccggtacacccgcgaatcggtccag

Basic information

species Zea mays
transcript GRMZM2G003057_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211421544|gb|FL418414.1|FL418414
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|149100496|gb|EE186576.2|EE186576
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|211127336|gb|FL391795.1|FL391795
EST:     CGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCGCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAA
genomic: CGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTC-CAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAA
EST: gi|211509432|gb|FL413813.1|FL413813
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|211256544|gb|FL390497.1|FL390497
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|211484497|gb|FL376552.1|FL376552
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|211242704|gb|FL378106.1|FL378106
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: gi|211394987|gb|FL376971.1|FL376971
EST:     CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG                         GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCACCGCTGGTCGGCTATGTGCATCGCGGCATGGGCGTGGCACTGCCACCCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgcccctcccctcgccgtccatctccacatccccatctctctctctctctaaatctctaagccggtacacccgcgaatcggtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT