1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgcgcccctcccctcgccgtccatctccacatccccatctctctctctctctaaatctctaagccggtacacccgcgaatcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATCCTTGGAGGCAGGGACGAGCTCGGCGGGGGAACGTGGATGGGGTGCACG
species | Zea mays |
transcript | GRMZM2G003057_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|149100496|gb|EE186576.2|EE186576
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|211127336|gb|FL391795.1|FL391795
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCGCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAEST: gi|211509432|gb|FL413813.1|FL413813
genomic: CGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTC-CAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAA
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|211256544|gb|FL390497.1|FL390497
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|211484497|gb|FL376552.1|FL376552
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|211242704|gb|FL378106.1|FL378106
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATEST: gi|211394987|gb|FL376971.1|FL376971
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
EST: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAG GCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
genomic: CCGACGCACCGCCTGCTTCTGCTGTTCAATCGCGACGAGTATCACTCCAGgtgcgcgccc ... atcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAAT
cccatctctctctctctctaaatctctaagccggtacacccgcgaatcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATCCTTGGAGGCAGGGACGAGCTCGGCGGGGGAACGTGGATGGGGTGCACG
ctctaaa putative branch site (score: 3)
tctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgcccctcccctcgccgtccatctccacatccccatctctctctctctctaaatctctaagccggtacacccgcgaatcggtccagGCCGACGCAGCCGGCGCAGTGGTGGGCGGCGGGGGAGGAAGCCAAGGAAATCCTTGGAGGCAGGGACGAGCTCGGCGGGGGAACGTGGATGGGGTGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG