1 5' 3' | 2 5' 3' |
gcatgcatggatgtgatgtgacgaattaatgacgacctagctcatcgactacacttgtttttgatttcaattcgcctcttaattaatacatacaaagcactgagatcatgcatgatgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAACAAGAGCAGTGACACGGCGAGGGTCTCGGTAGCTGCCTTCTTCAACCCCG
species | Zea mays |
transcript | AC148152.3_FGT005 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAG CTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAACEST: gi|14203965|gb|BG837642.1|BG837642
genomic: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAGgcatgcatgg ... atgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAAC
EST: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAG CTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCG-CTAACEST: gi|14204210|gb|BG837887.1|BG837887
genomic: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAGgcatgcatgg ... atgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAAC
EST: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAG CTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAAC
genomic: TCACTCCCCGACCTGGGGCACTCATGGTCAACATGGGCAGCTTTCTTCAGgcatgcatgg ... atgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAAC
attcgcctcttaattaatacatacaaagcactgagatcatgcatgatgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAACAAGAGCAGTGACACGGCGAGGGTCTCGGTAGCTGCCTTCTTCAACCCCG
aattaat putative branch site (score: 3)
ttaattaatacataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgcatggatgtgatgtgacgaattaatgacgacctagctcatcgactacacttgtttttgatttcaattcgcctcttaattaatacatacaaagcactgagatcatgcatgatgcatgcagCTTGTGACGAATGACCGGTACAAGAGCGTGGATCACCGGGTGCCGGCTAACAAGAGCAGTGACACGGCGAGGGTCTCGGTAGCTGCCTTCTTCAACCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC