Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110500605|gb|EE016262.1|EE016262EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|149080136|gb|EE169156.2|EE169156EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37392275|gb|CF633386.1|CF633386EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|149084307|gb|EE173744.2|EE173744EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148992997|gb|EE033706.2|EE033706EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37386720|gb|CF630548.1|CF630548EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148929194|gb|EC874738.2|EC874738EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37390453|gb|CF632456.1|CF632456EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|113702740|gb|EE680244.1|EE680244EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|113702801|gb|EE680305.1|EE680305EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|211339210|gb|FK955075.1|FK955075EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGGCGCG-TCCC
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGG-CGCGGTCC-
EST:
gi|211339202|gb|FK955067.1|FK955067EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|113701821|gb|EE679325.1|EE679325EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148941468|gb|EC886393.2|EC886393EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37386062|gb|CF630204.1|CF630204EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37379802|gb|CF626662.1|CF626662EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148996242|gb|EE035519.2|EE035519EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37380979|gb|CF627341.1|CF627341EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCTGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148996243|gb|EE035520.2|EE035520EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|113703950|gb|EE681454.1|EE681454EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37381636|gb|CF627714.1|CF627714EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|14203935|gb|BG837612.1|BG837612EST: GGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAAG-TGGCGCGGTCCA
genomic: GGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACG-AAGCTGGCGCGGTCCA
EST:
gi|148941469|gb|EC886394.2|EC886394EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37384691|gb|CF629439.1|CF629439EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148992998|gb|EE033707.2|EE033707EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|14203965|gb|BG837642.1|BG837642EST: AAGATTGCSCCGGATCCCGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCSG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGSTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|37379556|gb|CF626522.1|CF626522EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|14204210|gb|BG837887.1|BG837887EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|40336201|gb|CK370271.1|CK370271EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|148965454|gb|EE016263.2|EE016263EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|149080138|gb|EE169157.2|EE169157EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|149084308|gb|EE173745.2|EE173745EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
EST:
gi|211339203|gb|FK955068.1|FK955068EST: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCG GAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
genomic: AAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
46 (upstream exon),
49 (downstream exon)
Score:
24TCGACCTCTTCGAGTCCGCGGCGGCCGACTGGCGCGACACGCTCTACTGCAAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCATGTTCGAGCTGCTGTCGGAGTCCCTCGGCATGCCCAGCGACCACCTGCAC
Block sizes:
47 (upstream exon),
49 (downstream exon)
Score:
378TCGACCTCTTCGAGTCCGCGGCGGCCGACTGGCGCGACACGCTCTACTGCAAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCATGTTCGAGCTGCTGTCGGAGTCCCTCGGCATGCCCAGCGACCACCTGCAC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
287TCGACCTCTTCGAGTCCGCGGCGGCCGACTGGCGCGACACGCTCTACTGCAAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCATGTTCGAGCTGCTGTCGGAGTCCCTCGGCATGCCCAGCGACCACCTGCAC
Block sizes:
45 (upstream exon),
42 (downstream exon)
Score:
28TCGACCTCTTCGAGTCCGCGGCGGCCGACTGGCGCGACACGCTCTACTGCAAGATTGCGCCGGATCCGGCGCCGCGGGAGCTCGTGCCGGAGCCTCTCCGgtgtgtagat ... atgatgtaagGAACGTGATGATGGAATACGGCGAGGAACTGACGAAGCTGGCGCGGTCCATGTTCGAGCTGCTGTCGGAGTCCCTCGGCATGCCCAGCGACCACCTGCAC