1 5' 3' | 2 5' 3' | 3 5' 3' |
...actaaaactgtgtttttgagcatttgaactcttgatggaacataataaatggtgaattctgatgatcatttatgtttttttccctgggttaaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACCATGCATGTTTTTCTGTCAAAAGTGCTGTGCCAAGTGCCTGTGTGTACC
species | Vitis vinifera |
transcript | Vv17s0000g06210.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACC AATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACEST: gi|110409289|gb|EC974949.1|EC974949
genomic: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACCgtaagttcta ... aaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
EST: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACC AATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACEST: gi|351017245|gb|FQ435597.1|FQ435597
genomic: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACCgtaagttcta ... aaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
EST: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACC AATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACEST: gi|110390494|gb|EC955406.1|EC955406
genomic: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACCgtaagttcta ... aaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
EST: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACC AATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACEST: gi|110370010|gb|EC934184.1|EC934184
genomic: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACCgtaagttcta ... aaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
EST: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACC AATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
genomic: GGGTCGTATGGTCCAGGGAGTCTCAAGAGCAACCgtaagttcta ... aaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAAC
taaatggtgaattctgatgatcatttatgtttttttccctgggttaaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACCATGCATGTTTTTCTGTCAAAAGTGCTGTGCCAAGTGCCTGTGTGTACC
ttctgat putative branch site (score: 3)
atcatttatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaaactgtgtttttgagcatttgaactcttgatggaacataataaatggtgaattctgatgatcatttatgtttttttccctgggttaaatgagcagAATGCCCATCACAATGCACGAGGAGATGTAGCAAGACGCAGTACCACAAACCATGCATGTTTTTCTGTCAAAAGTGCTGTGCCAAGTGCCTGTGTGTACC
-ctaaaac
- - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - -aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga