1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtacacccctccaaacaagtactataaaattttgcctctacattttggtgtctactttgataacaaattcatttttttttttttttttttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
species | Vitis vinifera |
transcript | Vv17s0000g06210.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGTEST: gi|110409289|gb|EC974949.1|EC974949
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: CCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGTEST: gi|351017245|gb|FQ435597.1|FQ435597
genomic: CCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG GTCATGGCAGAAGAAGCCCAATACCATCTTGACAGTEST: gi|110390494|gb|EC955406.1|EC955406
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
tttggtgtctactttgataacaaattcatttttttttttttttttttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
tgataac putative branch site (score: 2)
ttcatttttttttttt putative PPT
tactttgataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacacccctccaaacaagtactataaaattttgcctctacattttggtgtctactttgataacaaattcatttttttttttttttttttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC