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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGTATTCAAGCCTCTCCCTCTCTCCATCTCCCCAATGGCAAAGCTTGTCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacacccctccaaacaagtactataaaattttgcctctacattttggtgtctactttgataacaaattcatttttttttttttttttttgtgtgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g06210.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383647|gb|EC948030.1|EC948030
EST:     TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG                         GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: gi|110409289|gb|EC974949.1|EC974949
EST:     CCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG                         GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
genomic: CCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: gi|351017245|gb|FQ435597.1|FQ435597
EST:     TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG                         GTCATGGCAGAAGAAGCCCAATACCATCTTGACAGT
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
EST: gi|110390494|gb|EC955406.1|EC955406
EST:     TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAG                         GTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT
genomic: TCCCTCTTCTGCTTTTGGCACTCTTTTCCATTTCCATGGTTGCAACAAAGgtgagtacac ... ttgtgtgtagGTCATGGCAAAAGAAGCCCAATACCATCTTGACAGT