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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagactcacttcctctcataattctcgtttctttctcaatcctgttcttttaacttaattagattttctttattttacttttgtcatctttctcttcataaacagGGACAATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAAGTTTTTGTCTCCATGGGTCAAAGACAGATTGAGCGAGGTCATCCAGAAC

Basic information

species Vitis vinifera
transcript Vv17s0000g04140.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728781|gb|EE104651.1|EE104651
EST:     TCTGTCACTGGATTGGGAGAACTCTGTTCAGGGCATATTTGTTCACCTAG                         GG--AATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAA
genomic: TCTGTCACTGGATTGGGAGAACTCTGTTCAGGGCATATTTGTTCACCTAGgtcagactca ... tcataaacagGGACAATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAA
EST: gi|110428804|gb|EC995285.1|EC995285
EST:     TCTGTCACTGGATTGGGAGAACTCTGTTCAGGGCATATTTGTTCACCTAG                         GG--AATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAA
genomic: TCTGTCACTGGATTGGGAGAACTCTGTTCAGGGCATATTTGTTCACCTAGgtcagactca ... tcataaacagGGACAATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttaattagattttctttattttacttttgtcatctttctcttcataaacagGGACAATAATCACAAGCATGCCCGCTTAGCTCTCAACAAGAAGCCTTTAAAGTTTTTGTCTCCATGGGTCAAAGACAGATTGAGCGAGGTCATCCAGAAC
             ttttctttattttact  CT-rich tract
     taattagattttcttt  TA-rich tract