Sequence
atgc intronic sequence ATGC exonic sequenceCTCCTTTCAATGCCGATGAATTTCTTGGAAGCTTATCGGCAAGAGGCCCAGGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAGgtaataaatatttactgccaattactttaacttaccactacttccaccctcttttttctgtcttttaacttgttttccttgcatacactattcttcattctaattttgccttccatcattattctgttgccttctaaaaattgttatgagctttgaatgcttttcatttctatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G13030.1 (Glycine max), 5'ss of exon 4
CTCCTTTCAATGCCGATGAATTTCTTGGAAGCTTATCGGCAAGAGGCCCAGGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAGgtaataaatatttactgccaattactttaacttaccactacttccaccctcttttttctgtcttttaacttgttttccttgcata-cactattcttcattctaattttgccttccatcattattctgttgccttctaaaaattgttatgagctttgaatgcttttcatttctatatag
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CTCCATTTAATGCTGATGAATTTCTTGCAAGTTTATCAGCCAGAGGTCCAGGGAAGTTCATTTTGAAGCGAATGAAATCTAACTGGCTTGACTTCTACAGgtaatgaat-tttatttgcaa--gatttgtcttg-------tactatcatttgctgcctacctctcagtatgatagtcttttacagtgtgatcttgcactaaaattttagttcctctgacttcacttattagatttatggtct-ttatgg--ttcacatgaacctttttatcag----
upper sequence: Vv17s0000g04140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G73930.2 (Arabidopsis thaliana), 5'ss of exon 2
CTCCTTTCAATGCCGATGAATTTCTTGGAAGCTTATCGGCAAGAGGCCCAGGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAGgtaataaatatttactgccaattactttaacttaccactacttccaccctcttttttctgtcttttaacttgttttccttgcatacactattcttcattctaattttgccttccatcattattctgttgccttctaaaaattgttatgagctttgaatgcttttcatttctatatag
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CATCATTTGGTGCTGATGAATTCCTTTCAAATTTATCTGGGAGAGGTGTAGGGAAGTTTTTGTCTAAACGGATGAAATCTAACTGGCCCGACTTGTATAGgta-taaacaat-attgtc--tcattctgggctaccaatattt--agttcccttgctaaacagttcattatatttcag---------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87583957|gb|DY473304.1|DY473304EST: GGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAG GCGATTTTTGAGGGGCCACAACTTCATGCCATGGTTTCAAAGAAGGCGTGC
genomic: GGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAGgtaataaata ... ttctatatagGCGATTTTTGAGGGGCCACAACTTCATGCCATGGTTTCAAAGAAGGCGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCTTTCAATGCCGATGAATTTCTTGGAAGCTTATCGGCAAGAGGCCCAGGGAAGTTTTTATCAAAGCGGATGAGATCTAACTGGCTGGACCTGTATAGgtaataaatatttactgccaattactttaacttaccactacttccaccctcttttttctgtcttttaacttgttttccttgcatacactattcttcattctaattttgccttccatcattattctgttgccttctaaaaattgttatgagctttgaatgcttttcatttctatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA