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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcatctgaaataactgagattgaggacaaggaacaatctccaaagttggtggatcaagtaaagagAATGAAAAATACCGGTGACTGTAAAGGTGCGAAATATTTGTATGGTTATGTGTTTAATAGGCAGAGACATGATGAGAGACTAAAGCGAGGTGGGGATCAA

Basic information

species Vitis vinifera
transcript Vv17s0000g04140.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G13030.1 (Glycine max), 3'ss of exon 3
gtcttcatctgaaataactgagattgaggacaaggaacaatctccaaagttggtggatcaagtaaagagAATGAAAAATACCGGTGACTGTAAAGGTGCGAAATATTTGTATGGTTATGTGTTTAATAGGCAGAGACATGATGAGAGACTAAAGCGAGGTGGGGATCAA
                  ||   |||     ||   |||    | |   |  | || | |||  | |||      | |   | |||  | |   |   |  | |  || |    |  |||||| |          |||   ||   | |                    
---------------gtatggctttgtctttaatagacagagac-acgatgagagGCTAAAGCGAGGAGGGGAGCAGAAGTCTGTGGTTATTTTGTCCCACAGTCCTTATTC--TAGTGTGTTCAGGCCTTTATTACAAATTGTAGGTCCCTTATAT------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactgagattgaggacaaggaacaatctccaaagttggtggatcaagtaaagagAATGAAAAATACCGGTGACTGTAAAGGTGCGAAATATTTGTATGGTTATGTGTTTAATAGGCAGAGACATGATGAGAGACTAAAGCGAGGTGGGGATCAA
 aaataac  putative branch site (score: 2)
                                             aagtaaa  TA-rich tract