1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacatgattgattgagccattattgccttttttccattctagttaaaaattttaattaacggaattctgtctggttgttcttgtggaaaaaacataaaaatgtttcccaatagaaaaaataagtaaataattaaattaagaaattctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGTTGAAAAACAAGGGAAGAATCGGTTACAGAATCTCAAACAAGCTGCAAA
species | Vitis vinifera |
transcript | Vv15s0048g02730.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|37190159|gb|CF609508.1|CF609508
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGEST: gi|26257434|gb|CA808497.1|CA808497
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|71878852|gb|DT027907.1|DT027907
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|30252208|gb|CB969759.1|CB969759
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|110409092|gb|EC974748.1|EC974748
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|30251454|gb|CB969187.1|CB969187
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|110715690|gb|EE094027.1|EE094027
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|71878364|gb|DT027419.1|DT027419
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|27578726|gb|CB001421.1|CB001421
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|71880010|gb|DT029065.1|DT029065
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|110367133|gb|EC931058.1|EC931058
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGEST: gi|26257329|gb|CA808392.1|CA808392
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
EST: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATG AAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
genomic: TGTAAATGATGATGAAGATATACCTATTATTGAGGCCAAAATGACTGATGgtacatgatt ... tctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAG
atgtttcccaatagaaaaaataagtaaataattaaattaagaaattctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGTTGAAAAACAAGGGAAGAATCGGTTACAGAATCTCAAACAAGCTGCAAA
ttctgtt CT-rich tract
aatagaaaaaataagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgattgattgagccattattgccttttttccattctagttaaaaattttaattaacggaattctgtctggttgttcttgtggaaaaaacataaaaatgtttcccaatagaaaaaataagtaaataattaaattaagaaattctgttgcagAAGCAGGAGAGGATCCTTTTGCTAAGAGACGAGCAGAAAAGAAGAAACGAGTTGAAAAACAAGGGAAGAATCGGTTACAGAATCTCAAACAAGCTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC