1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacttcttacctttcatttatataacttaacgaagccgtttctagttctttattttcttttatattctttatttcttatgtgaaactcttgctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAG
species | Vitis vinifera |
transcript | Vv15s0048g02730.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGEST: gi|110690893|gb|EE068371.1|EE068371
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAG
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|37190159|gb|CF609508.1|CF609508
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|26257434|gb|CA808497.1|CA808497
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCACCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|71878852|gb|DT027907.1|DT027907
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|30252208|gb|CB969759.1|CB969759
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAG--AAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGTCAAAGCTAAAEST: gi|30251454|gb|CB969187.1|CB969187
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAG--AAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGTCAAAGCTAAAEST: gi|110715690|gb|EE094027.1|EE094027
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCACCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|71878364|gb|DT027419.1|DT027419
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|27578726|gb|CB001421.1|CB001421
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|71880010|gb|DT029065.1|DT029065
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|110367133|gb|EC931058.1|EC931058
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAEST: gi|26257329|gb|CA808392.1|CA808392
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
EST: CCTTAGTCAAGTTGCCTCCACCGACGACAAGATTGCCTAGAGAAAAGCAT CTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
genomic: CCTTAGTCAAGTTGCCTCCGCCGACGACAAGATTGCCTAGAGAAAAGCATgtaagcctct ... gctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
ttctttattttcttttatattctttatttcttatgtgaaactcttgctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAG
ctcttgctctttc CT-rich tract
tattttcttttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttcttacctttcatttatataacttaacgaagccgtttctagttctttattttcttttatattctttatttcttatgtgaaactcttgctctttcagCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAG
- - - - -cctttca
- - - - - - - - - - - - - - - cgaagcc