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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatatatattgggattatctccatctttcagaaaaattatataatccaattatgcatttactaaacattaccaaacggataagttgatatatatcttttcatctttcttcagATCTTTGTGTTGAAAAGATGCGGTATGAGGCTGTAAGATGCATGTCTCGTTCATATCGCCCCACAGTGCCTGTTTCATATATTGCTCAGGTTCTGGGCTT

Basic information

species Vitis vinifera
transcript Vv13s0067g03720.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G38620.1 (Glycine max), 3'ss of exon 15
gtatatatatatattgggattatctccatctttcagaaaaattatataatccaattatg-catttactaaacattaccaaacgga-taagttgatatatatcttttcatctttcttcagATCTTTGTGTTGAAAAGATGCGGTATGAGGCTGTAAGATGCATGTCTCGTTCATATCGCCCCACAGTGCCTGTTTCATATATTGCTCAGGTTCTGGGCTT
               | || ||| |  |    |||      || | ||      |  |  ||  ||  | | ||  ||||  ||| |||  ||| ||  || |||| || |  |  ||||||| | ||||||||||||||| ||| ||||||| |  |||||||  || |||||||| || ||  | ||||||||||| ||| |||||||||| || ||
---------------gtgagtatttttaa---tcaactggtttttgtagcttgttggtaacacctaacatatatgtccaaggggaataaactgaaatgaattttttaatat--ccacagATCTCTATGTTGAAAAGATGCGCTATAAGGCTGTGAACTGCATGTGCCGGTCATATCGTCCAACTCTACCTGTTTCATACATTTCTCAGGTTCTTGGGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactaaacattaccaaacggataagttgatatatatcttttcatctttcttcagATCTTTGTGTTGAAAAGATGCGGTATGAGGCTGTAAGATGCATGTCTCGTTCATATCGCCCCACAGTGCCTGTTTCATATATTGCTCAGGTTCTGGGCTT
                                tatatcttttcatctt  CT-rich tract
                     ataagttgatatatat  TA-rich tract