1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcctcttttgcttagtgccttttataggtatctattatttgccgattaaaataataattagacgtgttgtctgactatcttattctttgtggtctacagTGCCAATCACAGTTGAAAACCCTTTATGCAGAAGGAATTGAGGGATGTGATATGGAATTTGCTGCTTACAACCTGCTTTGTGCCATCTTGCACTCTAGTA
species | Vitis vinifera |
transcript | Vv13s0067g03720.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
attaaaataataattagacgtgttgtctgactatcttattctttgtggtctacagTGCCAATCACAGTTGAAAACCCTTTATGCAGAAGGAATTGAGGGATGTGATATGGAATTTGCTGCTTACAACCTGCTTTGTGCCATCTTGCACTCTAGTA
gtctgac putative branch site (score: 3)
ttctttgt putative PPT
aataataattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctcttttgcttagtgccttttataggtatctattatttgccgattaaaataataattagacgtgttgtctgactatcttattctttgtggtctacagTGCCAATCACAGTTGAAAACCCTTTATGCAGAAGGAATTGAGGGATGTGATATGGAATTTGCTGCTTACAACCTGCTTTGTGCCATCTTGCACTCTAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
ttcctct
- - - - -tgcttag
- - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctga