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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttctcattccctctctttaaagcattccgttttcatgcttaatattcctaatttctttgacacttacattacttgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43870.1 (Glycine max), 5'ss of exon 7
TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttc---------------tcattccctctctttaaagcattccgttttcat--gcttaatattcctaatttctttgacacttacatta-cttgcag
|||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||  | ||||| ||  |  || ||                   | |  || ||    || ||||  || | |   ||   |     | |    | | | | ||  || | ||| |||
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGTTACCTGCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtttcctctcaggaattgaaattgtgtgctgctacttttgtctgccttcctcttccctccactccttgactatgaaccttattaaatttttatgaacttacag

upper sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 11
TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttctc--attccctctctttaaagcattccgttttcatgcttaatattcctaatttctttgac-acttacattacttgcag---------------
|||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| || || || ||||| |||||||| ||||||||  | ||||| ||     || ||    |||     | |||   ||      |||      |     | |||    || ||||| |   || ||| |   |                
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacag

upper sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttctcattccctctctttaaagcattccgttttcatgcttaatattcctaatttctttgacacttacattacttgcag
||| ||||| |||||||||||||| || |||||||| || |||||||||||||| || ||||||||||| || || |||||||| || |||||  | || || | |||  || ||| ||   || | |    || ||||  |||| |  |     ||  || || | |||||   ||   ||| || |||
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaaatattactatcttatattct-tatacctagtattct-ttttgacacc----atgactgatatttttga---ttgacttattttcag