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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG

Basic information

species Vitis vinifera
transcript Vv13s0067g03420.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
|||||    || ||     || |||||   |  |  | |    || || | ||    | ||| | |  |        || || |||   | |    || ||  | |||||| |||||||||||||  || || || || || ||||||||||||||||| |||||||| || || || ||||| ||||| |||||||||||||
gtttgcgcattattcttgtttgtattaaaatatctgtat----atcatgacttggcatatatgttaaccgacaattttgactactt---ttatgcatg-gttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 3'ss of exon 8
gtttgtttcttgttgcatattttat-tatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
||| |   ||| ||||| || | || ||| | ||     | ||   | |   |  |   ||  |  |   ||  |   |     || |||||   |||      |||||||  |||||||||||||  || ||  | || || ||||||||||||||||| ||||| || |||||||| |  ||| ||||||| ||||| ||||
gttcgcaacttattgcaaatatgatatattggtgtggcgtgcctcatttagctagtaacttcaa--aaatataataattaaaagctgatttccttttt------tgtgcagCAAATCACCTGGATTACCTTGGTCTTCAAGTTGCATGGGTTACTGGACCATGGTTCCTATCCATTTTCACCAATGTGCTTCCTTGGGAGAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
             ||  |   |||||  | ||     |  |  || ||| |      | |  |     ||   | ||              ||  |  |||  | | |||| ||||| || ||||  || || || || || |||||||| ||||| || ||||| || || ||||||||||| |||||||| ||||||||||
------------gtgtgtgacttatt-ccattatttgtaccacatgattgtcagacatattaacagcacaagattgacaaga---------acactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
||||||    | ||   || || ||| | ||        ||  |   | | ||||  ||         |||||   ||   || ||   |    | |   |  | |||||  ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||| ||||||||||
gtttgtaaactattt--taattcatttttgtctttgaactcacaaagtgaattttgtttctagcattccatttcttatttgttatttaattgtgtatacttattttgcagCCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 8
gtttgtttcttgttgca-tattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
||||||    | ||  | |   || || || |||  |    |||| |   |||| ||  |  | | |    | ||   ||  || || | |    ||    |  | |||||  ||||| || |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||| ||||||||||
gtttgtaaactattttaattcatttttgtcattgaaccca-ccaactgaaatttgtttctagtgtcacatttcttacttg--ttattttcttgtgttcactttttttgcagCCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttattt---cacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
                               ||   |    |||   || || |||| |  | |      ||     |   | || |  |   || ||||      | | ||||| |||| ||||||| ||| |||||||| ||||| |||||||| || || |||||||||||||| || |||||||||||||||||||||||||
------------------------------gtgagttccctcaaagttttttgtttcatcttgtagaatgttcacagttagtactaagctctgcaacttttctatgtctacagTTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttg-----tgtc-atgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
                             |||    |||||  | | || |||  ||||   |  |   |||| |  | | | || |    || | ||     |||| || ||||||| |||| || |||| ||| |||||||||||||| || ||||| || || ||||||||| |||| || || ||||||||||||||||||||||
-----------------------------gttagttttttcacagtcttgtttcatctt---accaaaaatttggagttggtgctaacactacttgtgatttctgtccatctgcagTTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTG

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S31_313V6.1 (Physcomitrella patens), 3'ss of exon 8
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcatttt-ggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
    ||   | ||  |||| | |    |  || ||   ||    |  ||   | |    ||||  ||| ||| |  ||    ||  || |  |  |||||||||| |||||  | ||| |||||    || ||||||||||| |||||||||| ||| || ||||| |||||||| ||| ||||  |  | |||||||| | ||
----gtgagtcgtatcatactcttgattttttacctacttgatttcgtttagtataggatataataggaattctcagaaaaattgctaatgta--tttgtgtcat-tgcagCAACTCATCTGGAGAGCCTTGGAGTGCAGGTAGCATGGGTTAGTGGCCCTTGGTTCCTTTCCATCTTTGTGAACGTCGTACCATGGGAGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG
                          ttcttattt  TA-rich tract