1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acttcaatgcacaatggtagaccctgttttcctgaatctttcctttgattgcttcattttgtatcttatttctgctgctacaatcactatatttgtgcagGAAAAATATGAAGAGGCGATCACTTCTCTTGCTCAGATGGAAAAGAGGGTGGTTATGGCAGAAACAATGTTAGAAGCTACCTTGCAATACCAATCTGGGC
species | Vitis vinifera |
transcript | Vv13s0067g03420.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAGCAAGATGCTGCAGCCCAGAGATATGCTGCTCAAGTGCTTCAG GAAAAATATGAAGAGGCGATCGCTTCTCTTGCTCAGATGGAAAAGAGGGTGEST: gi|30135773|gb|CB921111.1|CB921111
genomic: TTGCTGAGCAAGATGCTGCAGCCCAGAGATATGCTGCTCAAGTGCTTCAGgttatttatt ... atttgtgcagGAAAAATATGAAGAGGCGATCACTTCTCTTGCTCAGATGGAAAAGAGGGTG
EST: TTGCTGAGCAAGATGCTGCAGCCCAGAGATATGCTGCTCAAGTGCTTCAG GAAAAATATGAAGAGGCGATCGCTTCTCTTGCTCAGATGGAAAAGAGGGTG
genomic: TTGCTGAGCAAGATGCTGCAGCCCAGAGATATGCTGCTCAAGTGCTTCAGgttatttatt ... atttgtgcagGAAAAATATGAAGAGGCGATCACTTCTCTTGCTCAGATGGAAAAGAGGGTG
tgattgcttcattttgtatcttatttctgctgctacaatcactatatttgtgcagGAAAAATATGAAGAGGCGATCACTTCTCTTGCTCAGATGGAAAAGAGGGTGGTTATGGCAGAAACAATGTTAGAAGCTACCTTGCAATACCAATCTGGGC
ctttgat putative branch site (score: 5)
attttgtatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcaatgcacaatggtagaccctgttttcctgaatctttcctttgattgcttcattttgtatcttatttctgctgctacaatcactatatttgtgcagGAAAAATATGAAGAGGCGATCACTTCTCTTGCTCAGATGGAAAAGAGGGTGGTTATGGCAGAAACAATGTTAGAAGCTACCTTGCAATACCAATCTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - caatgca
- - - - - - - - - - accctgt
- - - - - - - - - - - - - - ttcctga
- - - - - - - - - - - - - - - - - - tctttcc
- - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcac