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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgggtaaaagacatttaattaccgtgatattcttcaggataatcaacatggatttaatactatgtagggtatctttttacagaatgtaattttgttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC

Basic information

species Vitis vinifera
transcript Vv13s0067g03420.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 10
gtactgggtaaaagacatttaattaccgtgatattcttcaggataatcaacatggatttaatactatgtagggtatctttttacagaatgtaattttgttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC
||||||| | ||| |  ||||||        ||           ||  | ||  | || |   | ||| |     | |  | ||||||  ||||||  |    | ||||||||| ||||| ||||| || || |||||||||||||||||||||||| | || |||||  |||||||||| ||||||||||||||| | |||||  |||| ||
gtactggctgaaa-atgtttaatggaaaaagta-----------aactagcaatgcttaag--ccatgca-----tatgctcacagaacttaatttcatc--atgtcttgtagGTCCTGCGTTGGTAACAACAAAGGATGCTGGAGATGCAGTTACTTTACTTCAGTCGTTGGCTGGCTCCACATTTGATAGCAGTCAGCTTGTACTGACAGC

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 10
gtactgggtaaaagacatttaattaccgtga-tattcttcaggataatcaacatggatttaatactatgtagggtatctttttacagaatgtaattttgttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC
                   || |  | |  | | ||  |  | | |   ||  | |    |||||| | |    ||  | |   || ||  ||||||  |    | ||||||||| ||||| ||||| || || |||||||||||||||||||||||| | || |||||  |||||||||| |||||||| |||||| | || ||  |||| ||
------------------gtactggctgaaaatgtttattggaaaaggtaatctag---caatact-tatgccatacatatcctcacaacttaatttcatc--atgtcttgtagGTCCTGCGTTGGTAACAACAAAGGATGCTGGAGATGCAGTTACTTTACTTCAGTCGTTGGCTGGCTCCACATTTGACAGCAGTCAGCTGGTACTGACAGC

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 3'ss of exon 10
gtactgggtaaaagacatttaattaccgtgatattcttcaggataatcaacatggatttaatactatgtag-ggtatctttttacagaatg---taatttt--gttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC
||||| | |  ||     |    |  |   |  ||      |||  |     ||||  |  |   | | || ||  || |  |  ||| ||   ||| ||   ||| | |    |  ||| ||||| || ||||| || |||||||||||||| || |||||| |||| || |||||| |||| |||||||||||||||||  | || || || |||||
gtacttgattgaaactgctggtctttc---aatttaagtgagatggtt--tgtggaccttctga-acgcagtggcgtcatcatcgagactgctctaacttatggtttaattcacttcagGTCCTGCATTAGTTACTACGAAGGATGCTGGAGACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAGCAGCCAGCTAGTTTTAACTGC

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 3'ss of exon 10
gtactgggtaaaagacatttaattaccgtgatattcttcaggataatcaacatggatttaatacta-tgtagggtatctttttacagaatgtaattttgttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC
                       |||   | |   | | || ||   | | |||  || | || || |  | || ||   | || |   | ||   |||     ||      ||| ||||| |||||||| || |||||   ||||||||| |||||| |||| || ||| || |||| |||||||||||||||||  | || || || |||||
----------------------gtactcggttgaacctaagtat---ccatatgatttaagtaataatcaatggaattgctctatactttttatgcttgccatatc------agGTCCTGCATTGGTTACAACCAAGGACATTGGAGATGCTGTTACTTTGCTACAATCAATGACTGGTTCAACATTTGATAGCAGCCAGCTCGTTTTCACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatactatgtagggtatctttttacagaatgtaattttgttcagtctcttgtagGACCTGCTTTGGTTACCACTAAGGATGCTGGAGATGCAGTTACTCTGCTGCAGTCACTGGCTGGCTCAACATTTGATAGCAGTGAACTTGTCTTGACTGC
 atttaat  putative branch site (score: 4)
                                             tctcttgt  putative PPT
                            aatgtaattttgtt  TA-rich tract