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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATTGACTGCAAGCACTTTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGgtaaaatttgttgtcatgcttgttaattatgtagagtatgttttcttctcatctggagttcaactgattataaatagcatttagctggaacttgtcttct...

Basic information

species Vitis vinifera
transcript Vv13s0064g01090.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g21390.2 (Oryza sativa), 5'ss of exon 4
GTCTATTGACTGCAAGCACTTTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGgtaaaa---tttgttgtcatgcttgttaattatgtagagtatgttttcttctcatctggagttcaactgattataaatagcatttagctggaacttgtcttct---
|||||||||||||||| |||| |||||||||| ||| || || || |||||  | || ||||| ||||||||| ||   | | |  | |       |||  ||||  | |  ||   || || || |  | ||     | || | |  | |||  | ||   ||| |   ||    
GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGGTCAAGCTGTTTCTACAAGgtagaaagctatatctttacatgctataaacatgtgaattcagtg--ctactaatgt--acttttgtggcttgtcatcaacataaatctc--actagctatccaga

upper sequence: Vv13s0064g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G42750.1 (Glycine max), 5'ss of exon 4
GTCTATTGACTGCAAGCACTTTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGgtaaaatttgttgtcatgcttgttaattatgtagagtatgttttcttctcatctggagttcaactgattataaatagcatttagctggaact-tgtcttct--
||| ||||| |||||||||||||| |||||  | ||||  ||||||||||| ||||||||||| ||||||||||  | |||    ||   |  |  | ||||           ||| | |  ||||        |   | |   |   |   |  || || | | | ||||  
GTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGgtaat-tctgtgaatataactagttctaatgtga--ctccccctctccccgcctgggccatttttctcttttcctgctaagcacttgtaattatcttttcttg

upper sequence: Vv13s0064g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G16340.1 (Glycine max), 5'ss of exon 4
GTCTATTGACTGCAAGCACTTTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGgtaaaatttgttgtcatgcttgttaattatgtagagtatgttttcttctcatctggagttcaactgattataaatagcatttagctggaacttgtcttct-
||| ||||| |||||||||||||| |||||  | || |  ||||||||||| ||||||||||| ||||||||||  | | |    ||  |   || || |   |    | |     || |  |  | |      |  |  |     ||      ||   | || |||| | 
GTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGAAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGgtaat-tctatgaatataataactagttctactgtaactttccctctccctgcctgggccatttttctctttttcggctacgcacttataattatcttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864548|gb|DT013603.1|DT013603
EST:     TTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAG                         CATGCATACCGTGATGGTCGCCTGGAGGAGGTAGTTCTGCGTCATCTCGGG
genomic: TTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGgtaaaatttg ... gttaatgcagCATGCATACCGTGATGGTCGCCTGGAGGAGGTAGTTCTGCGTCATCTCGGG