Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttctgactttcttagaattgacccataaatctagaggctccattatatccttgtttcctcatctttgtgttacagATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGATATGAACATGTTAAAGTTTCTCATTCTCAGCCTTCTGCTCCATCTTCAT

Basic information

species Vitis vinifera
transcript Vv13s0064g01090.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G395842_T02 (Zea mays), 3'ss of exon 2
---------------------gtaaaattttctgactttcttagaattg-acccataaatctagaggctccattatatccttgtttcctcatctttgtgttacagATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGATATGAACATGTTAAAGTTTCTCATTCTCAGCCTTCTGCTCCATCTTCAT---
                      |  | |||  |        | || ||  |  ||||| |  | |  |||   | |||| ||  |    ||  |||      ||| |||| || || || ||||||||||  ||||| |||||| | || ||||||||||| ||||| |||||||||| |    | ||  | |  ||| |  ||    
gtaacgtattagtaacattccatgcagtttagtcttacatatggagttacagtcataagtgcatatcctctgctgtatc-ttactgttacactttt-cacctcagGTTTGCACATTCTACCAAAAAGGTGCATGCTCGTATGGTAGCCGTTGCAGATATGACCATGTCAAAGTTTCTCGTA---ACCCCACAGTGCCACCACCACGCC

upper sequence: Vv13s0064g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G42750.1 (Glycine max), 3'ss of exon 2
---------gtaaaattttct--------gactttcttagaattgacccataaatctagaggctccattat--atccttgtttcctcatctttgtgttacagATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGATATGAACATGTTAAAGTTTCTCATTCTCAGCCTTCTGCTCCATCTTCAT
         | ||| | ||||        |||  | |||  ||| |   |||| | |  ||  | |  |    ||  ||  ||  |  |||   | | |||||| || || |||||||| ||||| |||||  | |||||| |||| ||||||||||| ||||| |||| |||||     ||  |||||||||||||||| |
gttggtgatgcaaactcttctttgctgcagaccctatta--attaattgataattatttagatttctctgataattttttcttgtttgtctcgttatgacagATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132944|gb|CB918283.1|CB918283
EST:     AAGGGGACCATTGTGAGTTTTCACATGATTGGAAGGCCTCACCAAATAAT                         ATTTGTCACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAG
genomic: AAGGGGACCATTGTGAGTTTTCACATGATTGGAAGGCCTCACCAAATAATgtaaaatttt ... tgtgttacagATTTGT-ACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAG
EST: gi|110733086|gb|EE108941.1|EE108941
EST:     AAGGGGACCATTGTGAGTTTTCACATGATTGGAAGGCCTCACCAAATAAT                         ATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGA
genomic: AAGGGGACCATTGTGAGTTTTCACATGATTGGAAGGCCTCACCAAATAATgtaaaatttt ... tgtgttacagATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccataaatctagaggctccattatatccttgtttcctcatctttgtgttacagATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGATATGAACATGTTAAAGTTTCTCATTCTCAGCCTTCTGCTCCATCTTCAT
 aattgac  putative branch site (score: 3)
                         tatccttgtttcctca  putative PPT
                     attatat  TA-rich tract