Sequence
atgc intronic sequence ATGC exonic sequenceAGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgtttttgcaggcagtttatatgcaagttcttcataactgcgtctaaaattatggtccaaattttttatatccttgacctgacctatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 5'ss of exon 8
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgtttttgcaggcagtttatatgcaagttcttcataactgcgtctaaaattatggtccaaattttttatatccttgacctgacctatgt--------------------------------------------------------
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---------ACCATCATGCACACGATCACACCCATGATCCTGGTGTTTCTTCTGTAAGCATTGTTTGTGAAGGGGAGATGGATCTTGAAAAGgttggttctaaatttatctgtcatgctctattttc----tcatcatcgctaaatg-aaatttagaatccaaatactatcacccttttaattgccctgcacataatggggttgtggatattgaaacaagcggataacaatcttacatgcacccacag
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G180418_T01 (Zea mays), 5'ss of exon 13
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgttt-ttgcaggcagtttatatgcaagttcttcataactgcgtctaaaattatggtccaaattttttatatccttg--acctgacctatgt----------------------------------
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---------ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatatttatcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G38450.1 (Glycine max), 5'ss of exon 8
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgtt-ggttttagtgt---ttttgcaggcagtttatatgcaagttcttcataactgcgt-ctaaaattatggtccaaattttttatatccttg-acctgacctatgt----------------------------------------
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AACACCATGATCACCACTCTCATGATCATAGTCACGATCCTGGTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGgttagacattggcgtatgcttaatgctaagtttatcaatttctctttaccatttggatgcttcgggaatggcttttattccagatgtttatgtacatgtaaaatttcaatattggcatttgcatactaaaaggttacatttttcag
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G43740.1 (Glycine max), 5'ss of exon 8
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttag---tgtttttgcaggca-gtttat--atgcaagttcttcat--aactgcgtctaaaat----tatggtccaaattttt---tatatccttgacctga----cctatgt----------------------------------
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AACACCATGATCATCACTCTCATGATCATAGTCACGATCCTGGTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGgttagacattgacatatacttaatgctaagtgtatcaatttctcttttccatttggatgcttcgggaatgccttttattccagatgtttatgtacatgtaaaaactaaaaagtcaatgttggcatttgcatactaaaaggctacctttttcag
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G80480.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgtttttgcag---gcagtttatatgcaagttcttcata--actgc-gtctaaaattatggtccaaattttttatatccttgacctgacctatgt-
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---ATCATCATCATCATTCTCATGATCACACCCATGATCCCGGTGTTTCTTCAGTCAGTATAGTTTGCGAAGGAAGCTTAGACCTTGAGAAGgtaa--tatagataatatgcagcttgagaggcacacaaaagtctcatataaaacgactgtttgatgaaaccgtatgttaatcttcaaattgtgtcacaatccatcag
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G15730.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgt------------tggttttagtgtttttgcaggcagtttata----tgcaagttct----tcataactgcgtctaaaattatggtccaaattttttat--atccttgacctgacctatgt-----------------------
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------AGCATCACCATTCTCATGATCACACCCATGACCCTGGTGTTGGTTCAGTCAGTATAGTTTGCGAAGGAGACTTAGACCTCGAGAAGgtattaacccaatatggctcaagttgtgtcacatgtgatgcataaaactgtagcacctgacgtgttacttataattaaaacgattgttgagatgtgcgattgattacttgcatcatctataaccttagttttgaaaatggatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32456847|gb|CD798021.1|CD798021EST: GTTTCTTCTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAG GCTAACATATGGTTGGGTACATTGTTGTTGGAACGTAGTGAAGATATATAT
genomic: GTTTC-T-TCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggtttta ... tttttttcagGCTAACATATGGTTGGGTACATTGTTGTTGGAACGTAGTGAAGATATATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgtttttgcaggcagtttatatgcaagttcttcataactgcgtctaaaattatggtccaaattttttatatccttgacctgacctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta