Sequence
atgc intronic sequence ATGC exonic sequencegttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 3'ss of exon 5
gttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
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---------------gtcagtgcaaatgcattcattttcttctgttttactgtatggttgcttctaacttctttat-------ttggtgcatacagAGCATGAATCGCATGGCTCATTTGAAACGAGCCGAGTATGGGAAAGTTGATTTGGATTACGTGCTTGGAATTGGAGGCTTTGATTTGGAGAG
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G43740.1 (Glycine max), 3'ss of exon 5
gttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
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gttggtgtctttct-cttcctattctatctaagagtttaatttttatttcattattt-tgagctccatatgaacctggcagtgtt--ttaattcagAAAATAAACAGCTTGGCTAACTTAAAGCGGACAGAGTATGGAAAAGTTAACTTGGATTATGTTCTTGGCATTGGGGGCTTTGATTTGGAGAG
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G38450.1 (Glycine max), 3'ss of exon 5
------gttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
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gttggtgtctttgtcttcctattctatctaagagttattattttaatt-ttatttcattattt-tgagctccatatgaacgtggctgtgttttt-aattcagAAAATAAACAGCTTGGCCAACTTAAAGCGGACAGAGTATGGAAAAGTTAACTTGGATTATGTTCTTGGCATTGGGGGCTTTGATTTGGAGAG
upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G15730.1 (Arabidopsis thaliana), 3'ss of exon 5
gttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtg-gtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
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gtaggttc--tgcttcttctgattctttcttttttctctttgaacatctatttttctctgtgcactgcgttagcatttatgatgtggttatttccagACCATAAACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAATTGGAGGGTTTGATCTAGAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
cttttgct CT-rich tract
tactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcagAATATAAATCGCTTGGCTCATCTCAAGCGGACAGAGTTTGGAAAAGTTGACTTGGATTATGTACTTGGAGTAGGAGGCTTTGATTTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA